Factsheet for GSMUA_Achr1P26200_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plasma membrane 3
extracellular 4
endoplasmic reticulum 3
golgi 3
vacuole 3
plastid 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88500	Soybean	cytosol	12.68	48.39
KRH25868	Soybean	cytosol, nucleus, plastid	36.34	46.4
PGSC0003DMT400049471	Potato	cytosol	50.7	41.76
KRH55647	Soybean	cytosol	52.68	40.3
Os02t0132600-02	Rice	cytosol	57.46	37.78
KRH25865	Soybean	cytosol	13.8	33.33
VIT_19s0014g05230.t01	Wine grape	cytosol	53.8	32.54
KRH22239	Soybean	cytosol	37.75	28.51
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	58.03	23.9
TraesCS6D01G087600.1	Wheat	cytosol, plastid	57.75	23.78
TraesCS6B01G124900.1	Wheat	cytosol, plastid	58.03	23.65
HORVU6Hr1G017720.35	Barley	plastid	57.75	23.09
OQU84311	Sorghum	mitochondrion	58.31	21.14
Zm00001d015156_P001	Maize	plastid	56.9	21.09
Solyc07g064110.2.1	Tomato	plastid	49.86	20.82
CDX79101	Canola	cytosol, mitochondrion	45.92	19.71
AT4G21880.1	Thale cress	cytosol	45.92	19.34
Bra013567.1-P	Field mustard	cytosol, mitochondrion	42.25	19.26
AT4G04790.1	Thale cress	cytosol, mitochondrion	44.51	19.24
CDY16646	Canola	plastid	44.23	19.17
CDX94576	Canola	plastid	44.51	19.15
Bra029518.1-P	Field mustard	plastid	40.85	19.08
CDX82873	Canola	cytosol, mitochondrion	45.07	18.67
KRH27097	Soybean	cytosol, mitochondrion	38.31	18.01
GSMUA_Achr1P26220_001	Banana	plastid	1.97	1.64
KRH55650	Soybean	mitochondrion, plastid	0.85	0.78
KRG88502	Soybean	vacuole	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr1G26200_001
EnsemblPlants:GSMUA_Achr1P26200_001	EnsemblPlants:GSMUA_Achr1T26200_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0S377	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294BF5D	:	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G26200_001]

Coordinates

chr1:-:21436564..21457345

Molecular Weight (calculated)

40368.6 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.136

Length

355 amino acids

Sequence
(BLAST)

001: MLILSGTLLS NQFEGAYNLL AYAKGMNEMP TTSMYNIIMA GYFREQNYYG ALNVLKQMED ADIKPDSKTF SYLIANCKCE EDIVKYRDEM RHSGIEFTKY
101: VYMALINAYA KFGNFEMAKQ VVLDKEIPVK YINEIKSVLV SALSSNGQVN DALCVSDEIK QAGSNLEPKA VISLIEHIRA EGEIDRLLQL LGELKDSNSW
201: FDGCSRVILY CIQYNLSSTA IELLKQLKEK DKSSTYIVID QIFSQIWETT PTNVKIGVEL LQAVKEELEL HPSRTSLDFL LSTCVKAKDS QLAWFVWAEY
301: EASGLSYNVS TFVRMYQALL ASREQEAANE MLKQIPKEDP HVRCLIQSCK TAYCY

Best Arabidopsis Sequence Match ( AT4G21880.1 )
(BLAST)

001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.