Factsheet for GSMUA_Achr2P23110_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G080290.6	Barley	nucleus	27.97	15.15
TraesCS6B01G361300.1	Wheat	nucleus	27.97	15.04
TraesCS6D01G309500.4	Wheat	nucleus	27.97	15.04
Bra033600.1-P	Field mustard	endoplasmic reticulum	25.87	11.86
TraesCS6A01G330400.1	Wheat	nucleus, plastid	28.67	8.15
CDY12124	Canola	nucleus	31.47	7.64
Bra010701.1-P	Field mustard	nucleus	31.47	7.63
CDX90315	Canola	nucleus	31.47	7.6
Zm00001d017507_P001	Maize	nucleus	27.27	7.34
CDX87111	Canola	nucleus	27.27	7.22
AT4G39160.2	Thale cress	nucleus	31.47	7.21
CDX72715	Canola	nucleus	25.87	7.13
CDY56766	Canola	nucleus	25.17	6.72
CDY16866	Canola	vacuole	25.17	6.62
KRH34776	Soybean	nucleus	20.28	5.82
PGSC0003DMT400045728	Potato	nucleus	26.57	5.32
Solyc02g081640.2.1	Tomato	nucleus	24.48	4.96
TraesCS1D01G314900.1	Wheat	nucleus	27.27	4.95
TraesCS1B01G326700.2	Wheat	nucleus	27.27	4.95
TraesCS1A01G314400.2	Wheat	nucleus	27.27	4.95
KXG24287	Sorghum	nucleus	26.57	4.87
HORVU1Hr1G067100.2	Barley	nucleus	26.57	4.83
OQU75762	Sorghum	nucleus	26.57	4.71
Zm00001d035113_P001	Maize	nucleus	26.57	4.53
KRG92007	Soybean	nucleus	15.38	4.24
KRH77688	Soybean	nucleus	24.48	3.74
Zm00001d017505_P003	Maize	plastid	28.67	3.61
VIT_03s0038g04460.t01	Wine grape	nucleus	26.57	3.61
KRH27726	Soybean	nucleus	21.68	3.27
Os03t0840500-00	Rice	cytosol, nucleus	3.5	1.17

Protein Annotations

MapMan:15.4.3.2	MapMan:15.5.2.2	GO:GO:0000126	GO:GO:0001026	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006359	GO:GO:0006383
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G23110_001	EnsemblPlants:GSMUA_Achr2P23110_001
EnsemblPlants:GSMUA_Achr2T23110_001	UniProt:M0SAF2	PFAM:PF15963	PANTHER:PTHR22929	InterPro:TFIIIB_B''	UniParc:UPI000296BCAD
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G23110_001]

Coordinates

chr2:-:21920646..21928256

Molecular Weight (calculated)

16415.7 Da

IEP (calculated)

4.419

GRAVY (calculated)

-1.324

Length

143 amino acids

Sequence
(BLAST)

001: MIQQLFPNRT RHQVKLKFKI EERKHPSQVH DALLRPSKDR THVMQVIKQL QIRAKPTSNG ETDGDQVNAL QDGVGKKEEE TSGVQSDQEQ QSDCEDEVEG
101: PEELDDSKGE ANSPSNFDEH QDLFDWDGVT SPQDTEKDTR WEM

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.