Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 6
- extracellular 5
- endoplasmic reticulum 6
- golgi 5
- vacuole 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P13240_001 | Banana | extracellular, plastid | 39.8 | 62.4 |
| TraesCS7D01G509900.1 | Wheat | endoplasmic reticulum, extracellular | 45.41 | 53.61 |
| GSMUA_Achr1P26060_001 | Banana | plastid | 59.18 | 52.25 |
| HORVU7Hr1G115850.2 | Barley | endoplasmic reticulum, plastid | 45.92 | 50.56 |
| GSMUA_Achr4P26830_001 | Banana | plastid | 31.63 | 46.97 |
| TraesCS7B01G436600.1 | Wheat | extracellular | 46.43 | 44.17 |
| Os06t0643500-01 | Rice | extracellular | 53.57 | 41.18 |
| GSMUA_Achr2P01500_001 | Banana | endoplasmic reticulum, extracellular | 31.12 | 39.35 |
| TraesCS7D01G509800.1 | Wheat | plasma membrane | 48.98 | 34.78 |
| GSMUA_Achr4P29020_001 | Banana | plastid | 36.73 | 34.45 |
| TraesCS7B01G436700.1 | Wheat | plasma membrane | 51.53 | 34.35 |
| TraesCS7A01G520100.1 | Wheat | extracellular | 52.04 | 33.33 |
| Zm00001d046596_P001 | Maize | extracellular | 51.53 | 33.22 |
| HORVU7Hr1G115830.3 | Barley | extracellular | 51.02 | 32.68 |
| EER88705 | Sorghum | extracellular | 49.49 | 31.39 |
| HORVU7Hr1G115810.1 | Barley | plastid | 50.0 | 25.99 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.2 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | EnsemblPlantsGene:GSMUA_Achr3G00830_001 | EnsemblPlants:GSMUA_Achr3P00830_001 |
| EnsemblPlants:GSMUA_Achr3T00830_001 | InterPro:Hydrophob_seed | UniProt:M0SAQ1 | PFAM:PF14547 | PANTHER:PTHR31731 | PANTHER:PTHR31731:SF54 |
| SMART:SM00499 | SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000296685F | SEG:seg |
Description
Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G00830_001]
Coordinates
chr3:+:642814..643711
Molecular Weight (calculated)
20105.0 Da
IEP (calculated)
8.331
GRAVY (calculated)
0.305
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSNTSAVL IAFMLLLYST APIVSGGYCP PPMHKPPRSK HHRPRSPGGP PTGRPPITVP PVIGNPPFTF PPVIGGPPVT VPPGIGGPPG TNPPGNNPSV
101: PSPGAPGSTT TCPVDTIRIG ACVDLLGGLV RVVIGDPVVN QCCPLLQGLL ELEAAVCLCT SIRLRLLNIN IYLPLALQLL ITCGITPPPG FTCTVN
101: PSPGAPGSTT TCPVDTIRIG ACVDLLGGLV RVVIGDPVVN QCCPLLQGLL ELEAAVCLCT SIRLRLLNIN IYLPLALQLL ITCGITPPPG FTCTVN
001: MDSSKLSSLS LCLFLICIIY LPQHSLACGS CNPRKGGKHS PKAPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTIPKLPVPP VTVPKLPVPP
101: VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPLPP ISGLPIPPVV GPNLPLPPLP IVGPILPPGT TPPATGGKDC PPPPGSVKPP
201: SGGGKATCPI DTLKLGACVD LLGGLVKIGL GDPAVNKCCP LLKGLVEVEA AACLCTTLKL KALDLNLYVP VALQLLLTCG KNPPPGYTCS I
101: VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPLPP ISGLPIPPVV GPNLPLPPLP IVGPILPPGT TPPATGGKDC PPPPGSVKPP
201: SGGGKATCPI DTLKLGACVD LLGGLVKIGL GDPAVNKCCP LLKGLVEVEA AACLCTTLKL KALDLNLYVP VALQLLLTCG KNPPPGYTCS I
Arabidopsis Description
At2g10940/F15K19.1 [Source:UniProtKB/TrEMBL;Acc:Q9SKI0]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.