Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g093850.1.1 | Tomato | cytosol | 42.43 | 63.55 |
| Os07t0492100-01 | Rice | plastid | 61.18 | 47.9 |
| EER97255 | Sorghum | plastid | 59.98 | 46.16 |
| VIT_16s0013g00300.t01 | Wine grape | nucleus | 54.5 | 45.98 |
| TraesCS2A01G226500.1 | Wheat | plastid | 59.76 | 45.64 |
| TraesCS2D01G237200.2 | Wheat | plastid | 59.98 | 45.55 |
| Zm00001d006443_P001 | Maize | nucleus | 60.09 | 44.81 |
| HORVU2Hr1G051300.27 | Barley | plastid | 59.43 | 44.61 |
| CDX92677 | Canola | nucleus, plastid | 52.08 | 43.38 |
| CDY11056 | Canola | nucleus, plastid | 51.97 | 43.33 |
| AT4G25120.1 | Thale cress | nucleus | 54.28 | 43.16 |
| Bra019188.1-P | Field mustard | nucleus | 51.64 | 41.32 |
| KRH33265 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 8.77 | 36.36 |
| Solyc03g093840.1.1 | Tomato | endoplasmic reticulum | 5.7 | 21.94 |
| TraesCS2B01G254500.1 | Wheat | plastid | 7.02 | 17.34 |
| GSMUA_Achr4P26310_001 | Banana | cytosol | 0.44 | 4.49 |
Protein Annotations
| Gene3D:1.10.10.160 | Gene3D:1.10.486.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DExx_box_DNA_helicase_dom_sf | InterPro:DNA_helicase_UvrD-like_C |
| InterPro:DNA_helicase_UvrD/REP | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0004003 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | EnsemblPlantsGene:GSMUA_Achr4G26320_001 |
| EnsemblPlants:GSMUA_Achr4P26320_001 | EnsemblPlants:GSMUA_Achr4T26320_001 | InterPro:IPR013986 | InterPro:IPR014016 | InterPro:IPR014017 | UniProt:M0SS94 |
| InterPro:P-loop_NTPase | PFAM:PF00580 | PFAM:PF13361 | PFscan:PS51198 | PFscan:PS51217 | PANTHER:PTHR11070 |
| PANTHER:PTHR11070:SF2 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI00029659BA | InterPro:UvrD-like_ATP-bd | InterPro:UvrD/AddA_N |
| SEG:seg | : | : | : | : | : |
Description
Putative ATP-dependent DNA helicase pcrA [Source:GMGC_GENE;Acc:GSMUA_Achr4G26320_001]
Coordinates
chr4:-:25667021..25686130
Molecular Weight (calculated)
104547.0 Da
IEP (calculated)
8.183
GRAVY (calculated)
-0.275
Length
912 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPTPRSCHR GSIVSPSSSV IDEDFDEAFL RDVDALCEER STAKKERPSE ENGKASWRRV VDSCEELDLD LQGSLNRDAG DWPVQQHKYW DYLKSLNHAQ
101: REAACSDVSV PLMIVAGPGS GKTSTMVGRV LTLLKEGFGP SNILAMTFTT AAASEMRDRI RAVAGKDVAT DLEISTFHSF CLQLCRRHAE KLGRTPEFLI
201: YGPGQQRRAV IEALRIMEND QNKHFQSTCQ CIYIVQCIPT YMFYWQAKAS GRATEECDKI GDEIGAMILR HYDEILTSCN ALDYHDFISS SVKLLTDFPE
301: VYNECLNTWK AIVIDEFQDT SSMQYHLLKI LASHNRVTIV GDEDQSIFSF NGADVCGFDS FRKDFPTHRE IRLNKNYRST WCIVEAASAV ILNNNKRCHI
401: KQVETDNSTG SKIIVMECHN EEAQCAFVAD KILEIASDGQ NADCSFGNVA ILYRRQVSGR AFQMCFRNRK IPFNSHGVAF YRKKVIKAIM AILRTTFPDC
501: DDGPFRQAFK ALLPGDKEEK KMVVDYVERI SSARKCSFQT AANDIFHAKV SGTFKRSQLT QGRKVLSALD MLSKLVRREP SISMVITSAA NMLPQKYLLE
601: KRAVVDVEGG KLLNEDNDLR SVVQYLMDDV SDFLSMHFTN KDVQNLSKEE GCGSILKSFI DFITMRETEN FRFRRQENKN SVTLTTIHQS KGLEWDVVFI
701: VKANDNEIPL LHEYNGIVHG GTTLEEERRL LYVAMTRARK KLYVVYIIMD SNWQLLQPSR FLREIPGHLL EIQVHSSVDS FTLMMLLRHY ACFLIVTSRL
801: IPYRKWMRPR SSISNNTVRT GQCVFVYIYI YIYICVCVTS PRVGRREVTS QIFFSLYIYI CIRFNLEERS IVSSLFHQWA KRPAFHHPNR LLDKIGFVVD
901: ERLRNKTYKH KV
101: REAACSDVSV PLMIVAGPGS GKTSTMVGRV LTLLKEGFGP SNILAMTFTT AAASEMRDRI RAVAGKDVAT DLEISTFHSF CLQLCRRHAE KLGRTPEFLI
201: YGPGQQRRAV IEALRIMEND QNKHFQSTCQ CIYIVQCIPT YMFYWQAKAS GRATEECDKI GDEIGAMILR HYDEILTSCN ALDYHDFISS SVKLLTDFPE
301: VYNECLNTWK AIVIDEFQDT SSMQYHLLKI LASHNRVTIV GDEDQSIFSF NGADVCGFDS FRKDFPTHRE IRLNKNYRST WCIVEAASAV ILNNNKRCHI
401: KQVETDNSTG SKIIVMECHN EEAQCAFVAD KILEIASDGQ NADCSFGNVA ILYRRQVSGR AFQMCFRNRK IPFNSHGVAF YRKKVIKAIM AILRTTFPDC
501: DDGPFRQAFK ALLPGDKEEK KMVVDYVERI SSARKCSFQT AANDIFHAKV SGTFKRSQLT QGRKVLSALD MLSKLVRREP SISMVITSAA NMLPQKYLLE
601: KRAVVDVEGG KLLNEDNDLR SVVQYLMDDV SDFLSMHFTN KDVQNLSKEE GCGSILKSFI DFITMRETEN FRFRRQENKN SVTLTTIHQS KGLEWDVVFI
701: VKANDNEIPL LHEYNGIVHG GTTLEEERRL LYVAMTRARK KLYVVYIIMD SNWQLLQPSR FLREIPGHLL EIQVHSSVDS FTLMMLLRHY ACFLIVTSRL
801: IPYRKWMRPR SSISNNTVRT GQCVFVYIYI YIYICVCVTS PRVGRREVTS QIFFSLYIYI CIRFNLEERS IVSSLFHQWA KRPAFHHPNR LLDKIGFVVD
901: ERLRNKTYKH KV
0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
Arabidopsis Description
SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.