Factsheet for GSMUA_Achr5P27620_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21390_001
GSMUA_Achr3P06790_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	GSMUA_Achr10P...	AT5G09540.1	21798944
AT1G73100.1	GSMUA_Achr1P21390_001	AT5G09540.1	21798944
AT1G73100.1	GSMUA_Achr3P06790_001	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P23930_001	Banana	plastid	21.68	50.95
TraesCS4B01G280000.1	Wheat	nucleus	53.56	45.66
Bra009408.1-P	Field mustard	nucleus	37.7	45.51
Os12t0128450-00	Rice	nucleus	44.5	44.79
Os11t0131600-00	Rice	nucleus	47.9	44.58
HORVU5Hr1G045170.2	Barley	nucleus, plastid	41.91	43.09
TraesCS3D01G378200.1	Wheat	plastid	47.57	42.92
Os11t0602200-01	Rice	nucleus	56.31	42.8
Bra028776.1-P	Field mustard	nucleus	43.04	41.89
TraesCS4D01G278500.1	Wheat	nucleus	55.5	41.88
TraesCS3A01G385200.1	Wheat	plastid	48.71	41.46
TraesCS4A01G023500.1	Wheat	nucleus	55.83	41.37
TraesCS5A01G140500.1	Wheat	nucleus	45.63	41.35
AT5G04940.2	Thale cress	nucleus	44.82	41.34
TraesCS5D01G152000.1	Wheat	nucleus	45.79	41.13
EER96081	Sorghum	nucleus	55.18	41.08
EES10399	Sorghum	nucleus	54.05	40.78
CDY11319	Canola	nucleus	42.39	40.62
HORVU4Hr1G074120.1	Barley	nucleus	55.18	40.6
Solyc09g082050.2.1	Tomato	nucleus	42.39	40.49
Bra005829.1-P	Field mustard	nucleus	42.23	40.47
VIT_13s0047g00120.t01	Wine grape	nucleus	46.76	40.36
TraesCS5B01G138800.1	Wheat	nucleus	46.28	40.28
CDX80930	Canola	nucleus	41.91	40.22
Zm00001d019195_P001	Maize	nucleus	55.66	40.19
TraesCS3B01G417400.1	Wheat	nucleus	54.05	40.1
CDX98805	Canola	nucleus	42.39	40.0
CDX96449	Canola	nucleus	42.39	39.88
Bra009409.1-P	Field mustard	nucleus	42.56	39.55
PGSC0003DMT400077329	Potato	nucleus	42.88	39.49
CDY04931	Canola	cytosol, extracellular, nucleus	4.85	39.47
KRH66648	Soybean	nucleus	44.98	39.27
VIT_08s0040g00360.t01	Wine grape	nucleus	46.76	39.21
CDY59935	Canola	nucleus	41.75	39.15
Zm00001d041005_P001	Maize	nucleus	44.17	39.06
CDX68245	Canola	nucleus	42.07	39.04
CDY61331	Canola	nucleus	42.23	39.01
CDY11129	Canola	nucleus	42.23	39.01
OQU78645	Sorghum	nucleus	46.93	38.87
KRH62706	Soybean	nucleus	41.91	38.83
KRH20576	Soybean	nucleus	42.23	38.78
KRH13229	Soybean	nucleus	42.23	38.78
Bra016018.1-P	Field mustard	nucleus	42.23	38.55
KRG95012	Soybean	plastid	30.26	38.32
AT1G73100.1	Thale cress	nucleus	40.78	37.67
CDX98804	Canola	nucleus	37.05	37.36
Solyc10g077070.1.1	Tomato	nucleus	43.04	37.25
PGSC0003DMT400018512	Potato	nucleus	42.72	36.77
CDY14135	Canola	nucleus	42.88	36.7
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	18.12	35.9
GSMUA_Achr1P01130_001	Banana	nucleus	30.26	34.0
GSMUA_Achr4P29270_001	Banana	nucleus	29.45	33.83
KRH56252	Soybean	nucleus	11.16	32.39
AT1G17770.1	Thale cress	nucleus	35.11	31.31
GSMUA_Achr5P13120_001	Banana	nucleus	30.58	31.14
CDY26218	Canola	nucleus	33.17	29.37
AT2G24740.1	Thale cress	nucleus	35.28	28.87
CDY66122	Canola	nucleus	32.36	28.01
CDY56214	Canola	nucleus	34.95	27.24
GSMUA_Achr8P00500_001	Banana	extracellular	11.81	26.74
CDX70182	Canola	nucleus	42.56	25.99
GSMUA_Achr6P36730_001	Banana	nucleus	24.6	25.76
GSMUA_Achr8P00490_001	Banana	nucleus	14.4	24.59
Bra004258.1-P	Field mustard	nucleus	34.79	23.39
Bra025949.1-P	Field mustard	nucleus	33.17	22.96
CDY26221	Canola	nucleus	32.69	22.57
GSMUA_Achr8P20300_001	Banana	plasma membrane	10.52	20.12
GSMUA_Achr1P20340_001	Banana	nucleus	14.89	12.96
CDY01852	Canola	plasma membrane	36.57	12.18
GSMUA_Achr5P08830_001	Banana	nucleus	15.21	8.27
GSMUA_Achr5P08820_001	Banana	cytosol	1.46	3.8
CDY21127	Canola	cytosol	0.16	1.23
CDX89821	Canola	cytosol	0.16	1.23
CDX86631	Canola	cytosol	0.16	1.23
CDY53193	Canola	mitochondrion	0.16	0.71

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024
GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	EnsemblPlantsGene:GSMUA_Achr5G27620_001	EnsemblPlants:GSMUA_Achr5P27620_001	EnsemblPlants:GSMUA_Achr5T27620_001
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794
InterPro:IPR036987	UniProt:M0T287	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	PFscan:PS50280
PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF479
InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00466
SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI000295A599
SEG:seg	:	:	:	:	:

Description

Putative Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27620_001]

Coordinates

chr5:+:28071303..28074025

Molecular Weight (calculated)

68669.4 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.395

Length

618 amino acids

Sequence
(BLAST)

001: MEERSNCAPH SWSESVVLDV KPLRSLAPMY PAPLGQKNTF SPPNAPPFVS VTTPFGSFTT ESAFPPGFCP LFPSFAASHD VNQKPVDVNF VNNANGFAPI
101: VSFNKEEPLA SGASPPYGRT IKRSPCSNSI HIGNSETEGS NKKRIKTRRP KATGGDLSLL PSSSHDPREP VEVVLMTFDA LRRRLMQLDE SKRLRPDLKA
201: GTIMMSSDLR ANMVKRIGQV PGVAVGDIFY FRIEMCLVGL HSQSVAGIDY MTARFGNEED PVALGVVSAG VYDNEEDNVD VLIYSGQGSS SKDDQKLERG
301: NLALEKSLHR ANEIRVIRSA KDPFVLNGKI YVYDGLYKIH ESWVEKGKSG FNTFKYKFLR EPGQPDGIAV WKMIEKWKQN PSSRANVILP DISSGIENMP
401: VCLVNDVDDE KGPRYFAYST TVSYSKPITS SRPLHSCMCN SVCMPGDSNC SCLHQNGGFL PYSSNGILIS CKPLIYECSV SCQCPTNCRN RVTQRGVQVH
501: FEVFRTRDRG WGLRCWDAIR AGTFICEYVG EVTESIQGVE YDEENDHIFQ PRHADQVVHD HGDDGFPHIM FFAAKHIPPM TELTYDYGPS SAEMGDYVQS
601: RRTKECFCGS VKCRGFFG

Best Arabidopsis Sequence Match ( AT5G04940.1 )
(BLAST)

001: MERNGGHYTD KTRVLDIKPL RTLRPVFPSG NQAPPFVCAP PFGPFPPGFS SFYPFSSSQA NQHTPDLNQA QYPPQHQQPQ NPPPVYQQQP PQHASEPSLV
101: TPLRSFRSPD VSNGNAELEG STVKRRIPKK RPISRPENMN FESGINVADR ENGNRELVLS VLMRFDALRR RFAQLEDAKE AVSGIIKRPD LKSGSTCMGR
201: GVRTNTKKRP GIVPGVEIGD VFFFRFEMCL VGLHSPSMAG IDYLVVKGET EEEPIATSIV SSGYYDNDEG NPDVLIYTGQ GGNADKDKQS SDQKLERGNL
301: ALEKSLRRDS AVRVIRGLKE ASHNAKIYIY DGLYEIKESW VEKGKSGHNT FKYKLVRAPG QPPAFASWTA IQKWKTGVPS RQGLILPDMT SGVESIPVSL
401: VNEVDTDNGP AYFTYSTTVK YSESFKLMQP SFGCDCANLC KPGNLDCHCI RKNGGDFPYT GNGILVSRKP MIYECSPSCP CSTCKNKVTQ MGVKVRLEVF
501: KTANRGWGLR SWDAIRAGSF ICIYVGEAKD KSKVQQTMAN DDYTFDTTNV YNPFKWNYEP GLADEDACEE MSEESEIPLP LIISAKNVGN VARFMNHSCS
601: PNVFWQPVSY ENNSQLFVHV AFFAISHIPP MTELTYDYGV SRPSGTQNGN PLYGKRKCFC GSAYCRGSFG

Arabidopsis Description

SUVH1Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.