Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 77.7 | 83.77 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 74.54 | 72.64 |
| Os03t0395900-02 | Rice | nucleus | 70.82 | 71.75 |
| TraesCS4D01G149700.1 | Wheat | nucleus | 69.52 | 70.57 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 68.59 | 69.89 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 67.84 | 68.74 |
| Solyc02g090850.2.1 | Tomato | nucleus | 71.19 | 68.27 |
| PGSC0003DMT400010353 | Potato | nucleus | 71.0 | 68.09 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 69.52 | 67.88 |
| KRH77000 | Soybean | nucleus | 68.4 | 67.65 |
| KRH28473 | Soybean | nucleus | 67.84 | 66.61 |
| AT4G36980.4 | Thale cress | nucleus | 68.22 | 66.01 |
| Bra011736.1-P | Field mustard | nucleus | 65.8 | 64.84 |
| CDX75625 | Canola | nucleus | 65.8 | 64.72 |
| Zm00001d029426_P024 | Maize | nucleus | 70.26 | 64.18 |
| OQU92461 | Sorghum | nucleus | 71.56 | 59.78 |
| CDX69275 | Canola | nucleus | 61.15 | 56.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P10170_001 | EnsemblPlants:GSMUA_Achr6T10170_001 | EnsemblPlantsGene:GSMUA_Achr6G10170_001 | InterPro:SWAP_N_domain | ncoils:Coil | PANTHER:PTHR13161 |
| PANTHER:PTHR13161:SF4 | PFAM:PF09750 | SEG:seg | SMART:SM01141 | UniParc:UPI000295716D | UniProt:M0T5R6 |
| MapMan:35.2 | : | : | : | : | : |
Description
splicing factor, arginine/serine-rich 16, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G10170_001]
Coordinates
chr6:+:6794427..6800144
Molecular Weight (calculated)
62836.9 Da
IEP (calculated)
10.435
GRAVY (calculated)
-1.437
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSER KVHDLMDAAR KRAQRRAVYL AKRRGDPQQS LQVAGSRCRV YRDDGLYQAA QDQQGLIPWN GKQDILIDRF DGRALLDFIR DSSSRAYRVQ
101: ERTEEEEEVE EFVNFERYRD LIKLRRRGFT DEDGLRHVHQ ELEAKNSLPF AFERPQSTQP PTSKGSYSQV GFSYKGDGHE ESHHVDSGNE EEEDDEEDDD
201: DDEKDFSSDD SNDEKMETIS KEFGIKRYNW LVYMDKKAKE EEKRQKEIIR GDPAIRKLSR KERRKASQIE REREREAARL TGRTPHHDPY RESRRSPTYE
301: AYPRSRGSRS KSRSYSPPHS RRHERSLRAD NGHQSKSKPP KIEYITEFGG TNDLDDQKFG VSPPSSPLQA DPLNRLSGGR ILEALHVDPA SALSLEQEKN
401: AKMLRPSVSS SSSAIAKLSK TPLGVSSKIQ QGEKKETPQE RLKRIMSKQL NKQIRKDTAA EMAKKREQER QRQEKLAEAS RISRYSHRSR SISYSPSPPR
501: RRRHSRSRSR SRSPRRNYCR SRSHSRSHSP RSRSRTKY
101: ERTEEEEEVE EFVNFERYRD LIKLRRRGFT DEDGLRHVHQ ELEAKNSLPF AFERPQSTQP PTSKGSYSQV GFSYKGDGHE ESHHVDSGNE EEEDDEEDDD
201: DDEKDFSSDD SNDEKMETIS KEFGIKRYNW LVYMDKKAKE EEKRQKEIIR GDPAIRKLSR KERRKASQIE REREREAARL TGRTPHHDPY RESRRSPTYE
301: AYPRSRGSRS KSRSYSPPHS RRHERSLRAD NGHQSKSKPP KIEYITEFGG TNDLDDQKFG VSPPSSPLQA DPLNRLSGGR ILEALHVDPA SALSLEQEKN
401: AKMLRPSVSS SSSAIAKLSK TPLGVSSKIQ QGEKKETPQE RLKRIMSKQL NKQIRKDTAA EMAKKREQER QRQEKLAEAS RISRYSHRSR SISYSPSPPR
501: RRRHSRSRSR SRSPRRNYCR SRSHSRSHSP RSRSRTKY
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLRHR
501: RSRSRSGSRS RRSRRHSSRS RSRSPSRSLS RSPKRSRRRS PSYSRSPRRR SSRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLRHR
501: RSRSRSGSRS RRSRRHSSRS RSRSPSRSLS RSPKRSRRRS PSYSRSPRRR SSRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.