Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G326700.2 | Wheat | nucleus | 89.71 | 89.59 |
| TraesCS1D01G314900.1 | Wheat | nucleus | 89.45 | 89.34 |
| TraesCS1A01G314400.2 | Wheat | nucleus | 88.06 | 87.94 |
| HORVU6Hr1G080290.6 | Barley | nucleus | 24.9 | 74.24 |
| KXG24287 | Sorghum | nucleus | 45.11 | 45.51 |
| Zm00001d035113_P001 | Maize | nucleus | 43.96 | 41.29 |
| Zm00001d017507_P001 | Maize | nucleus | 26.05 | 38.61 |
| Os03t0840500-00 | Rice | cytosol, nucleus | 19.95 | 36.77 |
| OQU75762 | Sorghum | nucleus | 32.66 | 31.85 |
| Zm00001d017505_P003 | Maize | plastid | 43.96 | 30.46 |
| GSMUA_Achr2P23110_001 | Banana | nucleus | 4.83 | 26.57 |
| Bra033600.1-P | Field mustard | endoplasmic reticulum | 8.13 | 20.51 |
| CDY12124 | Canola | nucleus | 15.12 | 20.2 |
| CDY56766 | Canola | nucleus | 13.72 | 20.15 |
| CDX90315 | Canola | nucleus | 14.99 | 19.93 |
| Bra010701.1-P | Field mustard | nucleus | 14.87 | 19.83 |
| AT4G39160.2 | Thale cress | nucleus | 15.12 | 19.07 |
| CDX72715 | Canola | nucleus | 12.07 | 18.3 |
| CDX87111 | Canola | nucleus | 12.07 | 17.59 |
| KRG92007 | Soybean | nucleus | 11.44 | 17.34 |
| CDY16866 | Canola | vacuole | 11.82 | 17.1 |
| KRH34776 | Soybean | nucleus | 10.04 | 15.86 |
| PGSC0003DMT400045728 | Potato | nucleus | 14.36 | 15.83 |
| Solyc02g081640.2.1 | Tomato | nucleus | 14.1 | 15.74 |
| VIT_03s0038g04460.t01 | Wine grape | nucleus | 18.17 | 13.58 |
| KRH77688 | Soybean | nucleus | 14.23 | 11.98 |
| KRH27726 | Soybean | nucleus | 14.23 | 11.81 |
Protein Annotations
| Gene3D:1.20.58.1880 | MapMan:15.4.3.2 | MapMan:15.5.2.2 | UniProt:A0A287G1S0 | EMBL:AK371337 | GO:GO:0000126 |
| GO:GO:0001026 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006359 | GO:GO:0006383 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G067100 | EnsemblPlants:HORVU1Hr1G067100.2 |
| InterPro:Homeobox-like_sf | InterPro:IPR017884 | PFAM:PF15963 | PFscan:PS51293 | PANTHER:PTHR22929 | InterPro:SANT/Myb |
| InterPro:SANT_dom | SMART:SM00717 | SUPFAM:SSF46689 | InterPro:TFIIIB_B'' | UniParc:UPI000B480D7B | SEG:seg |
Description
No Description!
Coordinates
chrchr1H:+:476056826..476062547
Molecular Weight (calculated)
87577.1 Da
IEP (calculated)
4.781
GRAVY (calculated)
-1.042
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDDEANFGD ITDAPAEAEA AVKFHPKVRG KLQKKSVPSL SVVPNRTVET SDEKAVALSQ DNSSQGLATN QEITSSTVLG SEMIGDVEAC GGTLYTPSDD
101: MLTVSSIDRV SRNDDPHDNP SEVDTHQENL VVSDTQASST HPTSETVDDL ADFGELFDTH SEEENVAKSK LKIKVKLSKA ASKSRKTGQK KVASTVDVVS
201: QNKEDGNDDL RGCNNEQVQA PRHEEHVQTS DSQPPLGTDD GIVDNFANHN LILEEPVPAE TAAKLRPKSQ RKPGRASSRA VGTSDDYAAA NLKDTNASVD
301: IGSQDGLISP HTDDTQPILG ELSAEAAATF LLDLGKKKGK GKSVTFVLPD DYEWIAPTDT NHNDIGSDEN LNTLLQQAPQ KHCLTEEHSD DQEYTDRESQ
401: YHEGEPSDHG VEQQSKLDVG KLELSMKLRS RTEFQKVGVS ENIVDDHLDE DFAEPSATEQ NNDSGDENTA GGKQKAVRKS RKRDPNKEPL RGSRRTSTKS
501: TLEKSQPTQQ KNKSEVSSRG RKRALKDTMM EQPEKKLTHR IRQKRAKEVQ TLLQKPDHEI DRMKLSVTHL RLLQEARERI QSKTPSGPSS SNQSSSHFGD
601: TDDFDPFGDN YDNDRTENHA LENATKLNYH SYMDKKTPAK WTKSDTDLFY QGLQQFGSDF AMIQQLFPDK SRDQVRQKFK SEDKKHPRQV DDAILHRSRD
701: NLYLKQVMKQ LNVEDSLKDV NITQKQEVAS SEANTGKEVF PETNTYSVEN CSTLSDEEMG THQSEVKEGE DFSGNADDDD LDVFDWY
101: MLTVSSIDRV SRNDDPHDNP SEVDTHQENL VVSDTQASST HPTSETVDDL ADFGELFDTH SEEENVAKSK LKIKVKLSKA ASKSRKTGQK KVASTVDVVS
201: QNKEDGNDDL RGCNNEQVQA PRHEEHVQTS DSQPPLGTDD GIVDNFANHN LILEEPVPAE TAAKLRPKSQ RKPGRASSRA VGTSDDYAAA NLKDTNASVD
301: IGSQDGLISP HTDDTQPILG ELSAEAAATF LLDLGKKKGK GKSVTFVLPD DYEWIAPTDT NHNDIGSDEN LNTLLQQAPQ KHCLTEEHSD DQEYTDRESQ
401: YHEGEPSDHG VEQQSKLDVG KLELSMKLRS RTEFQKVGVS ENIVDDHLDE DFAEPSATEQ NNDSGDENTA GGKQKAVRKS RKRDPNKEPL RGSRRTSTKS
501: TLEKSQPTQQ KNKSEVSSRG RKRALKDTMM EQPEKKLTHR IRQKRAKEVQ TLLQKPDHEI DRMKLSVTHL RLLQEARERI QSKTPSGPSS SNQSSSHFGD
601: TDDFDPFGDN YDNDRTENHA LENATKLNYH SYMDKKTPAK WTKSDTDLFY QGLQQFGSDF AMIQQLFPDK SRDQVRQKFK SEDKKHPRQV DDAILHRSRD
701: NLYLKQVMKQ LNVEDSLKDV NITQKQEVAS SEANTGKEVF PETNTYSVEN CSTLSDEEMG THQSEVKEGE DFSGNADDDD LDVFDWY
001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.