Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G149700.1 | Wheat | nucleus | 94.32 | 93.96 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 92.8 | 92.28 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 93.56 | 89.66 |
| Os03t0395900-02 | Rice | nucleus | 83.9 | 83.43 |
| Zm00001d029426_P024 | Maize | nucleus | 79.73 | 71.48 |
| OQU92461 | Sorghum | nucleus | 84.47 | 69.25 |
| GSMUA_Achr6P10170_001 | Banana | nucleus | 69.89 | 68.59 |
| GSMUA_Achr10P... | Banana | nucleus | 62.69 | 66.33 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 67.23 | 64.31 |
| KRH77000 | Soybean | nucleus | 63.45 | 61.58 |
| AT4G36980.4 | Thale cress | nucleus | 64.77 | 61.51 |
| KRH28473 | Soybean | nucleus | 63.45 | 61.13 |
| CDX75625 | Canola | nucleus | 62.69 | 60.51 |
| Bra011736.1-P | Field mustard | nucleus | 62.5 | 60.44 |
| Solyc02g090850.2.1 | Tomato | nucleus | 64.2 | 60.43 |
| PGSC0003DMT400010353 | Potato | nucleus | 64.02 | 60.25 |
| CDX69275 | Canola | nucleus | 56.82 | 51.28 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G039020.13 | EnsemblPlantsGene:HORVU4Hr1G039020 | InterPro:SWAP_N_domain | PANTHER:PTHR13161 | PANTHER:PTHR13161:SF4 | PFAM:PF09750 |
| SEG:seg | SMART:SM01141 | UniParc:UPI000B460792 | UniProt:A0A287NU18 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr4H:+:298174239..298181378
Molecular Weight (calculated)
61402.2 Da
IEP (calculated)
10.661
GRAVY (calculated)
-1.387
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSER KVHDLMDGAR RRAQRRYAYL ARRRGDPHQS LQVSGARCRV HRDDSLYQAT EDQRGLIPWN GKQDILIDRF DGRALLDFIR DSSSRSFQTQ
101: EKSEEEEELE DFVTFERYRD LIKHRRRGFS DETGLQHVAQ ELEAKAILPF SFEKSQSSQA PVSKGAYSQV GYSYKGDGNE DSDDLSSDDE DEEDGKDFSS
201: DDSSDEQMEN LAKEFGIKRY NWLVYMDKKV KEEEKRQKEI IKGDPSIKKM SRRDRRKASQ SEREREREAV RSVGRVSYRD PYRREQRRSP SYEAYSRGIR
301: SRSRSRSRSP SSRRHTRDTH AESNYRSKAK PPRVEYITEF GGSEDASDLK VTGISPPSSP IRADVPNRSS GLHILEALHS DPASSLSMEQ EKSANFLKPP
401: ASTSSALAKL KGASGGLGKT PQAEKKETPQ ERLKRIMSKQ LNKQIRKDTA AETAKKREQE RQRHEKLAEV GRYRLRSRSR SLSHSPPRKR HYSRSRSRSR
501: SPRRNHSRPL SRSRSPFYSP RYRSRSRH
101: EKSEEEEELE DFVTFERYRD LIKHRRRGFS DETGLQHVAQ ELEAKAILPF SFEKSQSSQA PVSKGAYSQV GYSYKGDGNE DSDDLSSDDE DEEDGKDFSS
201: DDSSDEQMEN LAKEFGIKRY NWLVYMDKKV KEEEKRQKEI IKGDPSIKKM SRRDRRKASQ SEREREREAV RSVGRVSYRD PYRREQRRSP SYEAYSRGIR
301: SRSRSRSRSP SSRRHTRDTH AESNYRSKAK PPRVEYITEF GGSEDASDLK VTGISPPSSP IRADVPNRSS GLHILEALHS DPASSLSMEQ EKSANFLKPP
401: ASTSSALAKL KGASGGLGKT PQAEKKETPQ ERLKRIMSKQ LNKQIRKDTA AETAKKREQE RQRHEKLAEV GRYRLRSRSR SLSHSPPRKR HYSRSRSRSR
501: SPRRNHSRPL SRSRSPFYSP RYRSRSRH
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLRHR
501: RSRSRSGSRS RRSRRHSSRS RSRSPSRSLS RSPKRSRRRS PSYSRSPRRR SSRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLRHR
501: RSRSRSGSRS RRSRRHSSRS RSRSPSRSLS RSPKRSRRRS PSYSRSPRRR SSRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.