Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G087600.1 | Wheat | cytosol, plastid | 85.92 | 88.52 |
| TraesCS6A01G096500.1 | Wheat | cytosol, mitochondrion | 85.59 | 88.17 |
| TraesCS6B01G124900.1 | Wheat | cytosol, plastid | 85.47 | 87.14 |
| Os02t0132600-02 | Rice | cytosol | 39.19 | 64.44 |
| GSMUA_Achr1P26200_001 | Banana | extracellular | 23.09 | 57.75 |
| Zm00001d015156_P001 | Maize | plastid | 59.68 | 55.32 |
| OQU84311 | Sorghum | mitochondrion | 60.36 | 54.75 |
| KRG88500 | Soybean | cytosol | 5.29 | 50.54 |
| VIT_19s0014g05230.t01 | Wine grape | cytosol | 29.95 | 45.32 |
| KRH25868 | Soybean | cytosol, nucleus, plastid | 13.63 | 43.53 |
| PGSC0003DMT400049471 | Potato | cytosol | 20.95 | 43.16 |
| KRH55647 | Soybean | cytosol | 22.18 | 42.46 |
| KRH25865 | Soybean | cytosol | 6.98 | 42.18 |
| KRH22239 | Soybean | cytosol | 19.37 | 36.6 |
| Solyc07g064110.2.1 | Tomato | plastid | 34.68 | 36.24 |
| Bra013567.1-P | Field mustard | cytosol, mitochondrion | 31.19 | 35.56 |
| CDX79101 | Canola | cytosol, mitochondrion | 33.11 | 35.55 |
| Bra029518.1-P | Field mustard | plastid | 29.73 | 34.74 |
| AT4G04790.1 | Thale cress | cytosol, mitochondrion | 31.76 | 34.35 |
| CDX82873 | Canola | cytosol, mitochondrion | 32.66 | 33.84 |
| CDY16646 | Canola | plastid | 31.08 | 33.7 |
| CDX94576 | Canola | plastid | 31.08 | 33.45 |
| AT4G21880.1 | Thale cress | cytosol | 31.42 | 33.1 |
| KRH27097 | Soybean | cytosol, mitochondrion | 28.04 | 32.98 |
| GSMUA_Achr1P26220_001 | Banana | plastid | 15.65 | 32.63 |
| KRH55650 | Soybean | mitochondrion, plastid | 12.61 | 28.94 |
| KRG88502 | Soybean | vacuole | 12.27 | 28.91 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A287TG79 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:HORVU6Hr1G017720 | EnsemblPlants:HORVU6Hr1G017720.35 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF13041 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF623 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000B481C0E | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:42564433..42573198
Molecular Weight (calculated)
100394.0 Da
IEP (calculated)
5.471
GRAVY (calculated)
-0.296
Length
888 amino acids
Sequence
(BLAST)
(BLAST)
001: TRKRPSTSRG AAVSPATAVS PASLLRLKQA AASKKTIFPS SLPHAVANGN RLHTPDPILA RHLLPTHSSP FSCSDGEEEE DNSRDFTKEI LSVLNGPDEA
101: EESGVTEALP EESEDNVDAI GNKILDMEWF AGSQPSNAMM HLRKEVAREK KKRYIFKNTE SRRFTRLMRM CADKLGMESA LEFFGRLGRD TGPKEFNALA
201: RVCLEKARAC GEIDSAVEHI FRAYRLFEMM KDRGFQIEED SYGPFLLYLM DVEMLEEFEM FSAFFRDANP RSCSRIPYYE MLLLIRAQDE ESIRELCRSV
301: EDCSEEADYC IAECYMLAFA ESNRKMDFVT FLKLLDPTKV LGSKYVSSIF KYMGRLELET HAEKLLQKMT SKEYSDVKVS SLIFDYAANI PSLEAEDVIS
401: AFNKWREKFK ITPSADAYDR IISFCCSSSK TSLALDVAEC LCKSNPSVPI ELLNPIIHAC EQGYELHMAR PLYNLMSLYK LKLKPETFRS MISLCVKMKD
501: VSQDGGHLLF LDISDSMTLL FIDIFSFQFE GAYTILTDAE ESGETSTVSL YNVIMAGYFR EKNHNRAQMV MSQMRIAGVK PDSETFSYLI SNCDCEEKIS
601: KYLDELRRDG VQMTKHAYMA LINAYSRLGN FDMAKQVALD KEIPPKCLSE VRSALVGALA SNGKLSDGLE LFDEIKQSGG YLEPKAAIAL IEHTQAEDQL
701: DRLYQLLEEV SEPGMWFDGC GRVLQYCVQH NHSDAAVDLL KQLKETNEMS TYMIVDQAFC QIWEMEPVNL DIGMVLLRAV KELGLHVSRT SLDFLLSACV
801: KAKDSQRAQQ IWEEYESSGL PHNVLSSLRM YQALLSSGQR LAAKKVYKTI PKDDLHVRCI LDSCKNTYNS KRGKRSAAIK PSSGKQEV
101: EESGVTEALP EESEDNVDAI GNKILDMEWF AGSQPSNAMM HLRKEVAREK KKRYIFKNTE SRRFTRLMRM CADKLGMESA LEFFGRLGRD TGPKEFNALA
201: RVCLEKARAC GEIDSAVEHI FRAYRLFEMM KDRGFQIEED SYGPFLLYLM DVEMLEEFEM FSAFFRDANP RSCSRIPYYE MLLLIRAQDE ESIRELCRSV
301: EDCSEEADYC IAECYMLAFA ESNRKMDFVT FLKLLDPTKV LGSKYVSSIF KYMGRLELET HAEKLLQKMT SKEYSDVKVS SLIFDYAANI PSLEAEDVIS
401: AFNKWREKFK ITPSADAYDR IISFCCSSSK TSLALDVAEC LCKSNPSVPI ELLNPIIHAC EQGYELHMAR PLYNLMSLYK LKLKPETFRS MISLCVKMKD
501: VSQDGGHLLF LDISDSMTLL FIDIFSFQFE GAYTILTDAE ESGETSTVSL YNVIMAGYFR EKNHNRAQMV MSQMRIAGVK PDSETFSYLI SNCDCEEKIS
601: KYLDELRRDG VQMTKHAYMA LINAYSRLGN FDMAKQVALD KEIPPKCLSE VRSALVGALA SNGKLSDGLE LFDEIKQSGG YLEPKAAIAL IEHTQAEDQL
701: DRLYQLLEEV SEPGMWFDGC GRVLQYCVQH NHSDAAVDLL KQLKETNEMS TYMIVDQAFC QIWEMEPVNL DIGMVLLRAV KELGLHVSRT SLDFLLSACV
801: KAKDSQRAQQ IWEEYESSGL PHNVLSSLRM YQALLSSGQR LAAKKVYKTI PKDDLHVRCI LDSCKNTYNS KRGKRSAAIK PSSGKQEV
001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.