Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G030250.2 | |
| HORVU4Hr1G039650.1 | |
| HORVU5Hr1G055620.1 | |
| HORVU5Hr1G069570.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89821 | Canola | cytosol | 64.8 | 100.0 |
| CDY21127 | Canola | cytosol | 64.0 | 98.77 |
| KRH56252 | Soybean | nucleus | 0.8 | 0.47 |
| Bra009408.1-P | Field mustard | nucleus | 0.8 | 0.2 |
| Bra028776.1-P | Field mustard | nucleus | 0.8 | 0.16 |
| CDX80930 | Canola | nucleus | 0.8 | 0.16 |
| CDY11319 | Canola | nucleus | 0.8 | 0.16 |
| Bra005829.1-P | Field mustard | nucleus | 0.8 | 0.16 |
| CDX98805 | Canola | nucleus | 0.8 | 0.15 |
| CDX96449 | Canola | nucleus | 0.8 | 0.15 |
| CDY59935 | Canola | nucleus | 0.8 | 0.15 |
| Bra009409.1-P | Field mustard | nucleus | 0.8 | 0.15 |
| CDX68245 | Canola | nucleus | 0.8 | 0.15 |
| KRH62706 | Soybean | nucleus | 0.8 | 0.15 |
| AT1G73100.1 | Thale cress | nucleus | 0.8 | 0.15 |
| CDY11129 | Canola | nucleus | 0.8 | 0.15 |
| CDY61331 | Canola | nucleus | 0.8 | 0.15 |
| AT5G04940.2 | Thale cress | nucleus | 0.8 | 0.15 |
| KRH20576 | Soybean | nucleus | 0.8 | 0.15 |
| KRH13229 | Soybean | nucleus | 0.8 | 0.15 |
| Bra016018.1-P | Field mustard | nucleus | 0.8 | 0.15 |
| VIT_13s0047g00120.t01 | Wine grape | nucleus | 0.8 | 0.14 |
| CDY14135 | Canola | nucleus | 0.8 | 0.14 |
| HORVU4Hr1G074120.1 | Barley | nucleus | 0.8 | 0.12 |
| CDX70182 | Canola | nucleus | 0.8 | 0.1 |
| HORVU6Hr1G069350.6 | Barley | nucleus | 0.0 | 0.0 |
| VIT_08s0040g00360.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| Solyc10g077070.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc09g082050.2.1 | Tomato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400077329 | Potato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400018512 | Potato | nucleus | 0.0 | 0.0 |
| KRH66648 | Soybean | nucleus | 0.0 | 0.0 |
| CDX98804 | Canola | nucleus | 0.0 | 0.0 |
| HORVU0Hr1G001190.1 | Barley | nucleus | 0.0 | 0.0 |
| HORVU1Hr1G008690.1 | Barley | nucleus | 0.0 | 0.0 |
| KRG95012 | Soybean | plastid | 0.0 | 0.0 |
| HORVU7Hr1G064110.6 | Barley | nucleus, plastid | 0.0 | 0.0 |
| HORVU1Hr1G025960.1 | Barley | nucleus, plastid | 0.0 | 0.0 |
| HORVU6Hr1G057990.5 | Barley | nucleus | 0.0 | 0.0 |
| HORVU5Hr1G057440.1 | Barley | plastid | 0.0 | 0.0 |
| HORVU5Hr1G045170.2 | Barley | nucleus, plastid | 0.0 | 0.0 |
| HORVU5Hr1G041830.2 | Barley | nucleus, plastid | 0.0 | 0.0 |
| HORVU3Hr1G096250.8 | Barley | golgi, mitochondrion, nucleus, plastid | 0.0 | 0.0 |
| HORVU3Hr1G075380.1 | Barley | nucleus | 0.0 | 0.0 |
| HORVU2Hr1G127770.1 | Barley | nucleus | 0.0 | 0.0 |
| HORVU2Hr1G127700.1 | Barley | nucleus | 0.0 | 0.0 |
| HORVU2Hr1G107560.8 | Barley | mitochondrion, nucleus | 0.0 | 0.0 |
| HORVU2Hr1G053260.1 | Barley | nucleus | 0.0 | 0.0 |
| HORVU1Hr1G068460.1 | Barley | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.1.23 | Gene3D:2.40.150.20 | UniProt:A0A287V4V8 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU6Hr1G090170 |
| EnsemblPlants:HORVU6Hr1G090170.1 | InterPro:IPR036853 | HAMAP:MF_01367 | PFAM:PF00238 | ScanProsite:PS00049 | PANTHER:PTHR11761 |
| PANTHER:PTHR11761:SF8 | InterPro:Ribosomal_L14P | InterPro:Ribosomal_L14P_CS | InterPro:Ribosomal_L14_sf | SMART:SM01374 | SUPFAM:SSF50193 |
| UniParc:UPI0002C84BD3 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:571460862..571463245
Molecular Weight (calculated)
13424.8 Da
IEP (calculated)
10.764
GRAVY (calculated)
-0.029
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLGLPVAAT VNCADNTGAK NLYIISVKGI KGRLNRLPSA CVGDMVMATV KKGKPDLRKK VMPAVIVRQR KPWRRKDGVF MYFEDNAGVI VNPKGEMKGS
101: AITGPIGKEC ADLWPRIASA ANAIV
101: AITGPIGKEC ADLWPRIASA ANAIV
001: MSKRGRGGTS GNKFRMSLGL PVAATVNCAD NTGAKNLYII SVKGIKGRLN RLPSACVGDM VMATVKKGKP DLRKKVLPAV IVRQRKPWRR KDGVFMYFED
101: NAGVIVNPKG EMKGSAITGP IGKECADLWP RIASAANAIV
101: NAGVIVNPKG EMKGSAITGP IGKECADLWP RIASAANAIV
Arabidopsis Description
RPL23AAt2g33370 [Source:UniProtKB/TrEMBL;Acc:Q1H559]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.