Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G283000.1 | Wheat | nucleus | 58.54 | 66.67 |
| TraesCS7B01G093600.1 | Wheat | nucleus | 58.54 | 66.67 |
| TraesCS7D01G189800.2 | Wheat | nucleus | 61.46 | 63.64 |
| TraesCS7A01G188800.1 | Wheat | nucleus | 54.63 | 61.88 |
| KXG21281 | Sorghum | nucleus | 25.37 | 30.06 |
| HORVU7Hr1G024150.1 | Barley | nucleus | 33.66 | 28.99 |
| HORVU7Hr1G028140.1 | Barley | nucleus | 27.8 | 26.39 |
| Zm00001d050594_P001 | Maize | nucleus | 26.83 | 26.07 |
| Zm00001d006791_P001 | Maize | nucleus | 19.02 | 25.49 |
| KXG21283 | Sorghum | nucleus | 28.29 | 23.77 |
| Zm00001d010889_P001 | Maize | plastid | 27.8 | 23.65 |
| HORVU7Hr1G025580.1 | Barley | cytosol, nucleus, plastid | 34.15 | 23.49 |
| OQU77390 | Sorghum | nucleus | 26.34 | 22.13 |
| TraesCS2D01G567700.1 | Wheat | nucleus | 39.02 | 21.16 |
| TraesCS2B01G617700.1 | Wheat | nucleus | 40.98 | 21.05 |
| EES18996 | Sorghum | nucleus | 29.27 | 20.83 |
| EES18995 | Sorghum | nucleus | 27.8 | 20.65 |
| Zm00001d024809_P001 | Maize | nucleus | 28.29 | 20.28 |
| EER88196 | Sorghum | nucleus | 28.78 | 18.67 |
| EER89573 | Sorghum | nucleus | 28.78 | 18.67 |
| EER94504 | Sorghum | nucleus | 25.85 | 18.4 |
| OQU76057 | Sorghum | nucleus | 27.32 | 18.24 |
| EER88198 | Sorghum | nucleus | 28.29 | 18.24 |
| HORVU1Hr1G080380.1 | Barley | nucleus | 29.76 | 18.1 |
| PGSC0003DMT400086891 | Potato | nucleus | 18.54 | 17.59 |
| OQU77389 | Sorghum | nucleus | 26.83 | 16.47 |
| EER89387 | Sorghum | nucleus | 25.37 | 16.35 |
| Solyc02g082380.1.1 | Tomato | nucleus | 17.56 | 16.22 |
| EER89299 | Sorghum | nucleus | 22.93 | 15.36 |
| Zm00001d024814_P001 | Maize | nucleus | 20.98 | 15.3 |
| Zm00001d045162_P001 | Maize | nucleus | 21.46 | 15.17 |
| Zm00001d024810_P001 | Maize | nucleus | 28.78 | 15.13 |
| KXG21278 | Sorghum | nucleus | 25.37 | 15.12 |
| KXG21280 | Sorghum | nucleus | 25.85 | 14.89 |
| Os06t0173800-00 | Rice | vacuole | 21.46 | 13.46 |
| HORVU4Hr1G068410.1 | Barley | nucleus | 13.66 | 13.4 |
| Solyc02g082390.1.1 | Tomato | nucleus | 17.56 | 12.81 |
| EES18997 | Sorghum | nucleus | 23.41 | 12.77 |
| PGSC0003DMT400091980 | Potato | nucleus | 17.07 | 8.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | UniProt:A0A287W4F3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU7Hr1G038390 | EnsemblPlants:HORVU7Hr1G038390.1 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR44042 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI000B4731EF | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:97207082..97208751
Molecular Weight (calculated)
23306.6 Da
IEP (calculated)
9.388
GRAVY (calculated)
-0.745
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLIHRFAPH PPSQALRVHT ITCFMATNSL SSTMKARVEG EGPAPFNTGF DDNNNNSCDG TNHDKNKKPD SLELRLWWPS ETTQQEGMEV VEERKEVTRS
101: VENRVKVPET GTSIHPHVIA PSARKYWTDE EHMLFLHGLG VYGRGKWKEI SKYLVTTKTP VQVSSHAQKY FRRIKKGESE RQRYSINDLE LKFVIPGTIG
201: NNSSA
101: VENRVKVPET GTSIHPHVIA PSARKYWTDE EHMLFLHGLG VYGRGKWKEI SKYLVTTKTP VQVSSHAQKY FRRIKKGESE RQRYSINDLE LKFVIPGTIG
201: NNSSA
001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR
Arabidopsis Description
SRM1Transcription factor SRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.