CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25865	Soybean	cytosol	98.92	62.59
KRH55647	Soybean	cytosol	84.95	17.03
GSMUA_Achr1P26200_001	Banana	extracellular	48.39	12.68
PGSC0003DMT400049471	Potato	cytosol	58.06	12.53
KRH22239	Soybean	cytosol	54.84	10.85
VIT_19s0014g05230.t01	Wine grape	cytosol	55.91	8.86
Os02t0132600-02	Rice	cytosol	49.46	8.52
KRH27097	Soybean	cytosol, mitochondrion	54.84	6.75
Solyc07g064110.2.1	Tomato	plastid	59.14	6.47
Bra013567.1-P	Field mustard	cytosol, mitochondrion	49.46	5.91
CDX79101	Canola	cytosol, mitochondrion	50.54	5.68
AT4G04790.1	Thale cress	cytosol, mitochondrion	48.39	5.48
AT4G21880.1	Thale cress	cytosol	49.46	5.46
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	50.54	5.45
TraesCS6D01G087600.1	Wheat	cytosol, plastid	50.54	5.45
TraesCS6B01G124900.1	Wheat	cytosol, plastid	50.54	5.4
Bra029518.1-P	Field mustard	plastid	44.09	5.39
HORVU6Hr1G017720.35	Barley	plastid	50.54	5.29
CDX82873	Canola	cytosol, mitochondrion	48.39	5.25
CDX94576	Canola	plastid	44.09	4.97
CDY16646	Canola	plastid	43.01	4.88
OQU84311	Sorghum	mitochondrion	50.54	4.8
Zm00001d015156_P001	Maize	plastid	48.39	4.7
KRG88502	Soybean	vacuole	0.0	0.0
KRH25868	Soybean	cytosol, nucleus, plastid	0.0	0.0
GSMUA_Achr1P26220_001	Banana	plastid	0.0	0.0
KRH55650	Soybean	mitochondrion, plastid	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0EET8	EnsemblPlantsGene:GLYMA_U0285002	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRG88500	ProteinID:KRG88500	ProteinID:KRG88500.1
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006EDDFE6	:	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_271:-:778..2323

Molecular Weight (calculated)

10819.3 Da

IEP (calculated)

8.866

GRAVY (calculated)

-0.226

Length

93 amino acids

Sequence
(BLAST)

1: LNGEICRCLV HFFVRMKDFE GAFRMIADLE DMNFKPTTNV YNAIMAGYFR EKNISGVLRV LKKMRGANVK PDSQTFSYLI RNCEKEEDIM KVA

Best Arabidopsis Sequence Match ( AT4G04790.2 )
(BLAST)

001: MFGAFDRVAK EMSVTEYNAM IGVYLEHAEK SNDLDYALGH IEKAFELLKS MRDRGFLIEE RVYGPLLGYL IGMDMVDEFH SFKDVIREAS PGSVERLGYY
101: EMLLWIHLGD GEKIEELCST IDGDNGESLS VLQENYLLAL CKKDQKYHLE RLLEIVDITK VRSSDLLANI FEYLGRFSLD SVASRFLWEL RESDEGVKNV
201: SDLISIYSTC TPNPTVEDTI LKFNKMHEEL DVMPSSTSYE KLVKYSCDSN EVVTALDVVE KMGEAGLMIS ADILHSLLHA IDEVLEFDLV RRIHSIMCTK
301: SVKPNTENFR SIIRLCTRIK DFEGAYNMLG NLKNFNLEPN SSMFNCILAG YFREKNVSSA LMVVKQMKEA GVKPDSITFG YLINNCTQED AITKYYEEMK
401: QAGVQATKRI YMSLIDAYAA SGKFEKAKQV LVDPDVPAIN QNELKSVLIS ALASRGKWAD ALHIYEEMRK AECHVDPKSI ISLIEYSDSK GELSTLVQLA
501: DDLQDDTSWI DGFFRMILFA VRNKKSSDIV DLLKRNKVRL LKKGIPVEAH FDEVFWAIAE TEPSKVHLGM DLLRFMKDEL GFVPSRKCLD FLLHACVNAK
601: DLEHGLLVWK EYQSAAFPCN VLSFLRMYQV LLAAGDSEGA KALVSKIPKD DKDVQHIIEE SQSAFSQAPN KKKPKKKMIV LSTK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.