CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49479	Soybean	nucleus	93.02	93.94
VIT_05s0049g02220.t01	Wine grape	nucleus	57.96	61.76
PGSC0003DMT400075191	Potato	nucleus	56.01	60.76
Solyc12g096990.1.1	Tomato	nucleus	55.59	59.85
PGSC0003DMT400003956	Potato	nucleus	57.4	59.05
Solyc09g090810.1.1	Tomato	nucleus	56.84	58.48
KRH07636	Soybean	nucleus	46.37	57.74
CDX78210	Canola	nucleus	50.84	57.69
CDX73506	Canola	nucleus	50.98	57.66
Bra007048.1-P	Field mustard	nucleus	50.7	57.53
AT4G13460.2	Thale cress	nucleus	50.7	55.85
AT2G33290.2	Thale cress	nucleus	48.6	53.46
CDY23755	Canola	nucleus	46.23	51.96
Bra021840.1-P	Field mustard	nucleus, plastid	45.81	51.49
CDY37735	Canola	nucleus, plastid	45.53	51.18
CDY19475	Canola	nucleus	38.13	49.46
GSMUA_Achr5P13120_001	Banana	nucleus	41.34	48.76
GSMUA_Achr4P29270_001	Banana	nucleus	36.45	48.51
GSMUA_Achr1P01130_001	Banana	nucleus	36.45	47.45
CDY17156	Canola	nucleus	37.43	47.35
TraesCS2A01G235400.1	Wheat	nucleus	43.85	46.87
Os07t0435900-01	Rice	nucleus	44.69	46.78
HORVU2Hr1G053260.1	Barley	nucleus	43.85	46.59
TraesCS2D01G240000.1	Wheat	nucleus	43.85	46.52
TraesCS2B01G254700.1	Wheat	nucleus	43.72	46.51
EER96294	Sorghum	nucleus	44.13	44.51
Bra005511.1-P	Field mustard	plastid	37.57	43.88
Zm00001d005445_P001	Maize	nucleus	34.92	43.78
GSMUA_Achr6P36730_001	Banana	nucleus	35.06	42.54
Zm00001d019520_P001	Maize	nucleus	34.22	37.29
KRH20576	Soybean	nucleus	30.45	32.39
KRH13229	Soybean	nucleus	30.31	32.24
KRH62706	Soybean	nucleus	28.91	31.03
KRH66648	Soybean	nucleus	30.59	30.93
KRH56252	Soybean	nucleus	8.66	29.11
KRG94709	Soybean	nucleus	12.01	28.57
KRG95012	Soybean	plastid	19.41	28.48
KRG90121	Soybean	nucleus	21.65	28.08
KRH76344	Soybean	nucleus	11.87	25.68
KRH20251	Soybean	nucleus, plastid	23.04	24.92
KRH06819	Soybean	nucleus	23.74	23.61
KRG91550	Soybean	nucleus	11.31	23.48
KRH39353	Soybean	nucleus	12.29	21.89
KRH28232	Soybean	nucleus	13.41	19.63
KRH77260	Soybean	nucleus	12.71	18.69
KRH77297	Soybean	nucleus	28.07	18.59
KRH35283	Soybean	nucleus	3.63	18.18
KRH28192	Soybean	nucleus	27.93	18.08
KRG97025	Soybean	nucleus	5.17	13.03
KRG95723	Soybean	nucleus	12.99	12.85
KRH67447	Soybean	nucleus	12.85	12.69
KRH34133	Soybean	nucleus	12.15	12.68
KRH19618	Soybean	nucleus	13.83	12.04
KRH32246	Soybean	nucleus	13.69	11.94
KRG92731	Soybean	nucleus	11.87	11.92
KRH68776	Soybean	nucleus	11.03	11.67
KRH28566	Soybean	nucleus	15.5	7.68
KRH76897	Soybean	nucleus	15.64	7.51
KRH08338	Soybean	nucleus	15.5	7.42
KRH69981	Soybean	nucleus	15.22	7.3
KRH67444	Soybean	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100795514	MapMan:12.3.3.7	MapMan:12.5.1.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10
EMBL:ACUP02012188	EnsemblPlantsGene:GLYMA_20G005400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214
InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	UniProt:K7N0L2	EnsemblPlants:KRG89164
ProteinID:KRG89164	ProteinID:KRG89164.1	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	PFscan:PS50280
PFscan:PS50867	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF95	InterPro:PUA-like_sf
InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf
InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI000233D95D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:521375..530540

Molecular Weight (calculated)

79814.1 Da

IEP (calculated)

6.047

GRAVY (calculated)

-0.356

Length

716 amino acids

Sequence
(BLAST)

001: MNSLFSPENL PPPPGIPIPA TIAAASTTTP NPILIPKLEP FDEWLNTHTP QQQQQSQDPN SSNGSLDLDL KLFGDESPED FSGDPNLLSD FNRLSQLFRT
101: AFSNNNAVPD PITQGIQQLG NDAVSNPFAK PPQNETTVVP PPSFQNGTVS DPGMLLQQQQ QYPNGAVSDP DSRAIVPVPE DGRSSSVAVT TPRQPRRCKE
201: LVRLMDVGGP EQRHFRDVVR RTRMLYDSLR VLATVEDEGR VDARRGRSDL RASAVMRNCG LWLNRDKRIV GAIPGVCIGD VFLYRMELCV VGLHGQPQAG
301: IDYLPASMSS NGEPIATSVI VSGGYEDDVD EGDVIIYSGH GGQDKHSRQV FHQKLEGGNL AMERSMHYGI EVRVIRGVRY EGAASATGRL YVYDGLYRIH
401: ECWFDVGKSG FGVYKYKLCR IDGQAKMGTV VMKEALMLRK DPLSFKPMCC LSLDVSNRKE NVAIRLFNDI DRNYDPLQYE YLVKTNFPQF VFHQSGRGTG
501: CECVDGCVEG CFCAMKNGGD FPYNQSGILL RGKPLVFECG PFCHCPPHCR NRVTQKGLKN RLEVFRSRET GWGVRSLDLI QAGAFICEYT GVVLTRDQAQ
601: LLTMNGDSLI YPNRFTDRWA EWGDLSMIDS NYVRPSYPSI PPLDFAMDVS RMRNVACYMS HSSTPNVLVQ FVLYDHNNLM FPHLMLFAME SIPPMRELSL
701: DYGVADEWTG KLSIGN

Best Arabidopsis Sequence Match ( AT4G13460.1 )
(BLAST)

001: MGSSHIPLDP SLNPSPSLIP KLEPVTESTQ NLAFQLPNTN PQALISSAVS DFNEATDFSS DYNTVAESAR SAFAQRLQRH DDVAVLDSLT GAIVPVEENP
101: EPEPNPYSTS DSSPSVATQR PRPQPRSSEL VRITDVGPES ERQFREHVRK TRMIYDSLRM FLMMEEAKRN GVGGRRARAD GKAGKAGSMM RDCMLWMNRD
201: KRIVGSIPGV QVGDIFFFRF ELCVMGLHGH PQSGIDFLTG SLSSNGEPIA TSVIVSGGYE DDDDQGDVIM YTGQGGQDRL GRQAEHQRLE GGNLAMERSM
301: YYGIEVRVIR GLKYENEVSS RVYVYDGLFR IVDSWFDVGK SGFGVFKYRL ERIEGQAEMG SSVLKFARTL KTNPLSVRPR GYINFDISNG KENVPVYLFN
401: DIDSDQEPLY YEYLAQTSFP PGLFVQQSGN ASGCDCVNGC GSGCLCEAKN SGEIAYDYNG TLIRQKPLIH ECGSACQCPP SCRNRVTQKG LRNRLEVFRS
501: LETGWGVRSL DVLHAGAFIC EYAGVALTRE QANILTMNGD TLVYPARFSS ARWEDWGDLS QVLADFERPS YPDIPPVDFA MDVSKMRNVA CYISHSTDPN
601: VIVQFVLHDH NSLMFPRVML FAAENIPPMT ELSLDYGVVD DWNAKLAICN

Arabidopsis Description

SUVH9Histone-lysine N-methyltransferase family member SUVH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0G7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.