CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48204	Soybean	nucleus	18.53	52.75
KRH15938	Soybean	nucleus	13.13	26.36
KRG94080	Soybean	nucleus	26.64	23.96
KRH17658	Soybean	nucleus	15.83	23.56
KRH17660	Soybean	nucleus	15.83	23.56
KRH17159	Soybean	nucleus	11.97	21.09
HORVU4Hr1G068410.1	Barley	nucleus	11.97	14.83
KRH18108	Soybean	nucleus	16.6	13.78
KRH48200	Soybean	nucleus	19.3	12.99
KRH42774	Soybean	nucleus	15.06	9.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A0R0E9B1	EMBL:ACUP02012625	EnsemblPlantsGene:GLYMA_20G097900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KRG90541	ProteinID:KRG90541
ProteinID:KRG90541.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR44042
PANTHER:PTHR44042:SF5	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00023DCCDF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:34119180..34120046

Molecular Weight (calculated)

29632.2 Da

IEP (calculated)

8.041

GRAVY (calculated)

-0.680

Length

259 amino acids

Sequence
(BLAST)

001: MGENNNKFHC CGDDDGFDEP LYLKYPALQD LEWEGTLICL PPDLSSLSNN FTPKVLPLSM SPPSETTVTR VPPMLPPVED ATYVQPNLQD QLSALQNINA
101: NQVAPMWPGS QINHSLSRKG SSSKSNECRR WSEEEHRLFL HGLQKYGKGD WINISRIIKT RNPTQVASHA QKYFLRQASS NKGKRRNIHD MVLPDGPVPH
201: RIYQQNGVSF RNLDGPITHH INHQNGVPFQ NLIMQELYEI HLAVPHYINQ QNWVLRPMR

Best Arabidopsis Sequence Match ( AT2G38090.1 )
(BLAST)

001: MNRGIEVMSP ATYLETSNWL FQENRGTKWT AEENKKFENA LAFYDKDTPD RWSRVAAMLP GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW
101: GGYDGASGNN GFNMNGYYFS AAGGKRGSAA RTAEHERKKG VPWTEEEHRQ FLMGLKKYGK GDWRNIARNF VTTRTPTQVA SHAQKYFIRQ VNGGKDKRRS
201: SIHDITTVNI PDSPDAAAAD NATANAPCSP PSVGGNQRET SEWEGQTLYD ETAAAFYNQN AFSETLLGMS STPYMAKLQE QSFLNASQFE SYNAYLQM

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.