CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34776	Soybean	nucleus	36.61	38.15
KRH27726	Soybean	nucleus	55.3	30.27
KRH77688	Soybean	nucleus	52.6	29.2
Bra033600.1-P	Field mustard	endoplasmic reticulum	14.26	23.72
HORVU6Hr1G080290.6	Barley	nucleus	10.02	19.7
TraesCS6B01G361300.1	Wheat	nucleus	10.02	19.55
TraesCS6D01G309500.4	Wheat	nucleus	10.02	19.55
Solyc02g081640.2.1	Tomato	nucleus	25.82	19.01
PGSC0003DMT400045728	Potato	nucleus	25.82	18.77
Bra010701.1-P	Field mustard	nucleus	19.65	17.29
CDY12124	Canola	nucleus	19.46	17.15
CDX90315	Canola	nucleus	19.46	17.06
CDY56766	Canola	nucleus	17.53	16.98
CDY16866	Canola	vacuole	17.34	16.54
CDX87111	Canola	nucleus	16.96	16.3
GSMUA_Achr2P23110_001	Banana	nucleus	4.24	15.38
VIT_03s0038g04460.t01	Wine grape	nucleus	29.67	14.62
AT4G39160.2	Thale cress	nucleus	17.34	14.42
CDX72715	Canola	nucleus	13.87	13.87
Zm00001d017507_P001	Maize	nucleus	13.49	13.18
TraesCS6A01G330400.1	Wheat	nucleus, plastid	11.37	11.73
KXG24287	Sorghum	nucleus	17.34	11.54
HORVU1Hr1G067100.2	Barley	nucleus	17.34	11.44
TraesCS1B01G326700.2	Wheat	nucleus	17.34	11.42
TraesCS1A01G314400.2	Wheat	nucleus	17.34	11.42
TraesCS1D01G314900.1	Wheat	nucleus	17.15	11.29
OQU75762	Sorghum	nucleus	17.34	11.15
Zm00001d035113_P001	Maize	nucleus	16.96	10.5
Zm00001d017505_P003	Maize	plastid	17.34	7.92
Os03t0840500-00	Rice	cytosol, nucleus	5.01	6.09

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.4.3.2	MapMan:15.5.2.2	UniProt:A0A0R0EMU9	EMBL:ACUP02012723	EnsemblPlantsGene:GLYMA_20G185200
GO:GO:0000126	GO:GO:0001026	GO:GO:0001156	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006359	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0070898	InterPro:Homeobox-like_sf	EnsemblPlants:KRG92007	ProteinID:KRG92007
ProteinID:KRG92007.1	PFAM:PF15963	PANTHER:PTHR22929	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
InterPro:TFIIIB_B''	UniParc:UPI0006ED8FF5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:42348738..42352769

Molecular Weight (calculated)

57886.2 Da

IEP (calculated)

4.484

GRAVY (calculated)

-0.857

Length

519 amino acids

Sequence
(BLAST)

001: MMEKSNKSLA ATIPSQLDSN AMYSEDAVHN GTRDWPSSFG SSGEAADIFS GLESLNDFLT QAATDTRKPA LHSFNEKGAE ENFVSPAFTF NEAAVLNEDD
101: THTSNRSETE EIVDLNPARP GDDVFHYQSM KSGEDPTSGI PVHEELTNAA DSPTLADSLH ADVTREKEDS NKRKKDGSTS FSLRKNIISS IAGEEDKGAT
201: RKPANSSFNE DVEDNNDLDD DYEVDNPSKK KRVSTSSQKK LVAKSGKTSR KRKKANDDLE KSEEPPKNFG YILMQKIFFF IVDKALLEIP EDELDLRQIP
301: IKDTILLEEH RERLAVCILY SNPCVAIGGV SLHEAGAYDE EEFSCSEDGR DPYDDQANEG ITSTSHLFNH QSLMKKAPRE TWSKQDTQRF YEAVRTMGTA
401: FSLLELLFPG KTPRQIKLKF NNEDGKYRSR LDDAVYNRAK DHSGDLWIEP VKLASTKAEE DPSGDASDFM MAEEVVDLTA GTNDADDKAQ EDSVAVHSPE
501: QSDDRGHDFQ KWSQYKSVL

Best Arabidopsis Sequence Match ( AT4G39160.1 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.