CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48204	Soybean	nucleus	15.28	48.35
KRH15938	Soybean	nucleus	12.5	27.91
KRG90541	Soybean	nucleus	23.96	26.64
KRH17658	Soybean	nucleus	14.93	24.71
KRH17660	Soybean	nucleus	14.93	24.71
KRH17159	Soybean	nucleus	10.76	21.09
HORVU4Hr1G068410.1	Barley	nucleus	10.76	14.83
KRH48200	Soybean	nucleus	18.4	13.77
KRH18108	Soybean	nucleus	12.85	11.86
KRH42774	Soybean	nucleus	12.15	8.91

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A0R0EJA6	EMBL:ACUP02011713	EnsemblPlantsGene:GLYMA_19G060700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KRG94080	ProteinID:KRG94080
ProteinID:KRG94080.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12374
PANTHER:PTHR12374:SF26	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0006ED5F6D

Description

hypothetical protein

Coordinates

chr19:+:12112589..12113599

Molecular Weight (calculated)

33375.8 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.969

Length

288 amino acids

Sequence
(BLAST)

001: MVERNEERIR VPLKRKDFVS IELKERMGEN NNNEFHGCGG NTTSQGGDDG FDEPLYWKYP TLQDLEWEGS SPIDVSAIRD HHHSGSSYVV DATYIQPNLQ
101: DQLPSLQNIN SGNNTHDYPH TQFINSAANQ VAPMWPDSQS NHSLSRKASS WKSNECRRWS EEDHRLFMLG LQKYGKEDWK NISRIIKTRN PTQVASHAQK
201: YFLCQASSNK GKRRSIHDMV LPDNGPVPHR IYQENEVSFP NLDGPITHHI DHQNGVPFQN HTMQELYEIH LAVPHYINQQ NWVLRPMR

Best Arabidopsis Sequence Match ( AT5G08520.1 )
(BLAST)

001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR

Arabidopsis Description

SRM1Transcription factor SRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.