CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94709	Soybean	nucleus	36.11	86.38
KRH20251	Soybean	nucleus, plastid	74.03	80.51
VIT_14s0068g01090.t01	Wine grape	nucleus	54.03	74.1
GSMUA_Achr8P00500_001	Banana	extracellular	24.58	64.84
Bra006226.1-P	Field mustard	nucleus	50.69	61.04
CDX70530	Canola	nucleus	50.97	60.86
CDX78549	Canola	nucleus	50.83	60.6
AT5G13960.1	Thale cress	nucleus	50.69	58.49
Solyc02g094520.2.1	Tomato	nucleus	54.72	58.2
GSMUA_Achr8P00490_001	Banana	nucleus	28.06	55.8
Os01t0927000-01	Rice	nucleus	49.03	53.24
Zm00001d042272_P003	Maize	nucleus	48.47	51.93
OQU88147	Sorghum	nucleus	49.44	51.3
TraesCS3A01G441200.1	Wheat	nucleus	49.03	51.16
TraesCS3D01G433900.1	Wheat	nucleus	49.03	51.16
KRH76344	Soybean	nucleus	23.47	51.06
TraesCS3B01G475200.1	Wheat	nucleus	46.25	50.68
HORVU3Hr1G096250.8	Barley	golgi, mitochondrion, nucleus, plastid	49.03	46.08
KRH39353	Soybean	nucleus	24.44	43.78
OQU77925	Sorghum	nucleus	45.83	43.77
Zm00001d011956_P002	Maize	mitochondrion, nucleus, plastid	42.64	42.17
TraesCS1A01G241600.2	Wheat	nucleus	46.53	40.9
TraesCS1D01G241500.1	Wheat	nucleus	46.11	40.54
KRG90121	Soybean	nucleus	23.47	30.62
KRH62706	Soybean	nucleus	25.97	28.04
KRH56252	Soybean	nucleus	8.06	27.23
KRH13229	Soybean	nucleus	24.86	26.6
KRH20576	Soybean	nucleus	24.86	26.6
KRH66648	Soybean	nucleus	26.11	26.55
KRH07636	Soybean	nucleus	19.86	24.87
KRG91550	Soybean	nucleus	11.53	24.06
KRH49479	Soybean	nucleus	23.61	23.98
KRG89164	Soybean	nucleus	23.61	23.74
KRG95012	Soybean	plastid	15.83	23.36
KRH35283	Soybean	nucleus	4.44	22.38
KRH77260	Soybean	nucleus	14.86	21.97
KRH77297	Soybean	nucleus	31.39	20.91
KRH28232	Soybean	nucleus	14.03	20.65
KRH28192	Soybean	nucleus	30.0	19.53
KRH34133	Soybean	nucleus	15.28	16.04
KRH68776	Soybean	nucleus	14.44	15.36
KRG92731	Soybean	nucleus	15.14	15.29
KRG97025	Soybean	nucleus	5.97	15.14
KRH32246	Soybean	nucleus	17.08	14.98
KRH67447	Soybean	nucleus	15.0	14.9
KRH19618	Soybean	nucleus	16.81	14.72
KRG95723	Soybean	nucleus	14.31	14.23
KRH28566	Soybean	nucleus	16.81	8.37
KRH76897	Soybean	nucleus	17.22	8.31
KRH08338	Soybean	nucleus	17.22	8.29
KRH69981	Soybean	nucleus	16.94	8.17
KRH67444	Soybean	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100795584	MapMan:12.3.3.7	Gene3D:2.30.280.10	UniProt:A0A0R0FUI7	EMBL:ACUP02009883
ncoils:Coil	EnsemblPlantsGene:GLYMA_16G047800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794
InterPro:IPR036987	EnsemblPlants:KRH06819	ProteinID:KRH06819	ProteinID:KRH06819.1	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF467	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	SMART:SM00508	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI000233BEE1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:4539530..4555997

Molecular Weight (calculated)

79469.6 Da

IEP (calculated)

7.556

GRAVY (calculated)

-0.494

Length

720 amino acids

Sequence
(BLAST)

001: MVVQSLDDVV HQQLMVSATA EKSSESKIAV TANGGNGAKS AEKKLRELSE EGSTMPPRRS SARIQALQKA EEELLARKRA EGVEEKDNCN DEVKAGKAKK
101: RNRKSSSDGE ESVVVEVEVV SPPMKKGVAY RKGKVVDGVN GNVKVGEVNG KEGLENAGGG LGEKSDLLKV KETIRLFNKY YLHLVQEEEK RCGKAEAERK
201: AAKKASKSKK GAPPEESKTT AKRPDLKAVS KMMENNEILY PEKRIGNIPG IDVGYQFYSR AEMVAVGFHS HWLNGIDYMG QSYAKAYSYE LPVAVAIVIS
301: GMYEDDLDNA EDVVYTGQGG HNLTGDKRQF RDQKLERGNL ALKNCSEQCV PVRVIRGHES SSSYTGKVYT YDGLYKVVNY WAGKGISGFT VYKFRLRRLE
401: GQPTLTTNQV YFTYGRVPQS LTEIQGLVCE DITGGQEDMP IPATNLVDDP PVPPTDFTYC KSLKVAKNVK LPMNATGCKC EGICNDPTSC ACALRNGSDF
501: PYVSRDGGRL IEAKDVVFEC GPKCGCGPGC VNRTSQRGLR YRLEVFRTAK KGWAVRSWDF IPSGAPVCEY TGILARAEDM DSVLENNYIF EIDCLQTIKG
601: LGGRERRSQD GEIPANLLDK YHDQCSESVP EFCIDAGSTG NIARFINHCC EPNLFVQCVL STHDDLRLAR IMLFAADNIP PLQELTYDYG YVLDSVLDSD
701: GKIKQMPCYC GASVCRKRLF

Best Arabidopsis Sequence Match ( AT5G13960.1 )
(BLAST)

001: MAGKRKRANA PDQTERRSSV RVQKVRQKAL DEKARLVQER VKLLSDRKSE ICVDDTELHE KEEENVDGSP KRRSPPKLTA MQKGKQKLSV SLNGKDVNLE
101: PHLKVTKCLR LFNKQYLLCV QAKLSRPDLK GVTEMIKAKA ILYPRKIIGD LPGIDVGHRF FSRAEMCAVG FHNHWLNGID YMSMEYEKEY SNYKLPLAVS
201: IVMSGQYEDD LDNADTVTYT GQGGHNLTGN KRQIKDQLLE RGNLALKHCC EYNVPVRVTR GHNCKSSYTK RVYTYDGLYK VEKFWAQKGV SGFTVYKYRL
301: KRLEGQPELT TDQVNFVAGR IPTSTSEIEG LVCEDISGGL EFKGIPATNR VDDSPVSPTS GFTYIKSLII EPNVIIPKSS TGCNCRGSCT DSKKCACAKL
401: NGGNFPYVDL NDGRLIESRD VVFECGPHCG CGPKCVNRTS QKRLRFNLEV FRSAKKGWAV RSWEYIPAGS PVCEYIGVVR RTADVDTISD NEYIFEIDCQ
501: QTMQGLGGRQ RRLRDVAVPM NNGVSQSSED ENAPEFCIDA GSTGNFARFI NHSCEPNLFV QCVLSSHQDI RLARVVLFAA DNISPMQELT YDYGYALDSV
601: HGPDGKVKQL ACYCGALNCR KRLY

Arabidopsis Description

SUVH4Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.