CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21766	Soybean	nucleus	67.61	67.33
KRH42098	Soybean	nucleus	52.31	57.14
KRH49811	Soybean	nucleus	51.51	54.35
KRH62217	Soybean	cytosol, nucleus	21.13	42.68
CDY31322	Canola	cytosol	31.79	42.36
Bra031921.1-P	Field mustard	cytosol	31.19	42.01
CDY69792	Canola	cytosol	22.54	38.23
Bra009389.1-P	Field mustard	cytosol	22.33	37.88
VIT_03s0017g00300.t01	Wine grape	nucleus	36.82	37.65
AT5G09540.1	Thale cress	nucleus	20.93	37.14
AT5G64360.7	Thale cress	nucleus	34.41	36.85
CDY21586	Canola	cytosol	21.13	36.33
Bra024289.1-P	Field mustard	nucleus	33.0	35.73
CDX84519	Canola	nucleus	33.2	34.74
CDY58269	Canola	nucleus	33.0	32.67
GSMUA_Achr3P06790_001	Banana	cytosol	20.72	31.69
KRH72458	Soybean	nucleus	22.13	31.61
Solyc07g007230.2.1	Tomato	nucleus	26.36	30.75
KRG99455	Soybean	nucleus	15.69	30.0
KRH45560	Soybean	nucleus	15.9	29.81
KRH16845	Soybean	nucleus	21.53	29.4
KRG89389	Soybean	extracellular	8.85	29.33
CDY46799	Canola	nucleus	22.74	28.83
EER92178	Sorghum	nucleus	22.33	27.54
TraesCS4A01G160900.1	Wheat	cytosol	22.13	27.5
TraesCS4B01G160100.1	Wheat	cytosol	22.13	27.43
Os09t0463700-01	Rice	nucleus	20.32	27.15
HORVU4Hr1G039650.1	Barley	nucleus	21.73	27.14
GSMUA_Achr10P...	Banana	cytosol	22.94	27.08
GSMUA_Achr1P21390_001	Banana	cytosol	21.93	27.05
Zm00001d047214_P001	Maize	extracellular	21.53	26.95
KRH69663	Soybean	nucleus	16.1	26.94
Os03t0392400-01	Rice	nucleus	21.93	26.91
PGSC0003DMT400073845	Potato	cytosol	35.21	26.84
Solyc11g006170.1.1	Tomato	nucleus	35.01	26.81
TraesCS4D01G156000.1	Wheat	nucleus	21.53	26.68
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	21.13	26.52
Solyc01g105780.2.1	Tomato	nucleus	37.42	25.94
PGSC0003DMT400079004	Potato	cytosol	25.55	24.85
PGSC0003DMT400083794	Potato	nucleus	36.62	24.5
KXG35797	Sorghum	nucleus	18.71	24.22
KXG36712	Sorghum	cytosol	21.13	24.14
Solyc11g006140.1.1	Tomato	nucleus	28.77	24.03
Os07t0620200-01	Rice	cytosol, mitochondrion, nucleus	19.11	23.99
Zm00001d022168_P001	Maize	cytosol, mitochondrion, peroxisome	21.33	23.98
TraesCS2B01G191300.1	Wheat	cytosol	18.51	23.47
HORVU2Hr1G030250.2	Barley	cytosol	18.31	23.39
TraesCS2A01G165100.1	Wheat	cytosol	18.31	23.27
TraesCS2D01G172200.1	Wheat	cytosol	18.11	23.02
EES14021	Sorghum	nucleus	20.32	22.85
Zm00001d047043_P001	Maize	nucleus	19.72	22.63
Zm00001d020762_P001	Maize	nucleus	19.92	22.5
HORVU5Hr1G055620.1	Barley	cytosol, nucleus, plastid	11.67	19.59
TraesCS5D01G252200.1	Wheat	cytosol, nucleus, plastid	20.52	19.35
TraesCS5B01G242900.1	Wheat	cytosol	20.32	19.17
HORVU5Hr1G069570.1	Barley	nucleus	20.32	18.5
TraesCS5A01G245400.1	Wheat	cytosol, nucleus, plastid	19.52	18.37
KRH74501	Soybean	nucleus	16.3	16.7
Bra027007.1-P	Field mustard	nucleus	23.54	15.68
AT1G62970.1	Thale cress	nucleus	24.95	15.56
CDY45473	Canola	nucleus	23.34	15.51
CDY45966	Canola	nucleus	23.14	15.46

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100778926	MapMan:12.5.1.16.2	EMBL:ACUP02009148	InterPro:DnaJ_domain	EnsemblPlantsGene:GLYMA_15G057800
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	UniProt:I1ME04
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH10601	ProteinID:KRH10601	ProteinID:KRH10601.1
PFAM:PF00226	PFscan:PS50076	PANTHER:PTHR45496	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000233B5F6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:4450904..4452397

Molecular Weight (calculated)

54783.7 Da

IEP (calculated)

5.537

GRAVY (calculated)

-0.679

Length

497 amino acids

Sequence
(BLAST)

001: MDGHGGGGGG SRGEAELWLY TANKVLSARD LHGARSFAIR ARDSDPRYEP TELLLAVIDT LMAGEARIND QLDWYAILQV LRYTQNIDYI AAQYRRLATQ
101: LDPHHNPFAF AAHAFTLVHD AWTVLSNPTK KTFYDNQLRL LTQPPPPQPP PPPPAPPAPV AFFPIQPPQP NLNPNPIPNL VPPRESPRPR PRVEVEPPPP
201: APPPSSQLDN ATELTRASEA ESEGASFWTA CPYCYVMYEY PKVYEDCTLR CQNCRRGFHA MVVRSPPKDG TFGSFCSWGF FPVGFSGDFK DINGSSSKWN
301: PFSPLFPCAL KGAEQNSRYQ KGPWVFYDDD ASAEFVEAGS DTTEDDSDDD DWRGGNQKGT TRRRKRRKRR SNAGGDVRRV PTIERPRRRV QNSDGNDSVG
401: NGEAVDGGAL AVPVAPESSK KAVALGGSRR RSERNLGKLD LNVEFSNEVE EPVHGAGEGN GNAEDNIEGI GFFEGLDEFL SSLPILNVVA DDKVKGH

Best Arabidopsis Sequence Match ( AT5G64360.2 )
(BLAST)

001: MVGGRGGVGG GGGNRVEADQ WLVTSEKLLA SSDLQGAKTF AIRACEADPT RAEAADYILA ICDILLAGET RLGDSNLPDW YAVLRLGRLA QNPEHVATQY
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT

Arabidopsis Description

AT5G64360 protein [Source:UniProtKB/TrEMBL;Acc:Q9FMF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.