CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15938	Soybean	nucleus	51.02	58.14
KRH48204	Soybean	nucleus	19.73	31.87
KRH17658	Soybean	nucleus	19.73	16.67
KRH17660	Soybean	nucleus	19.73	16.67
HORVU4Hr1G068410.1	Barley	nucleus	20.41	14.35
KRH18108	Soybean	nucleus	29.25	13.78
KRG90541	Soybean	nucleus	21.09	11.97
KRG94080	Soybean	nucleus	21.09	10.76
KRH48200	Soybean	nucleus	24.49	9.35
KRH42774	Soybean	nucleus	18.37	6.87

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EMBL:ACUP02009056	EnsemblPlantsGene:GLYMA_14G202600	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7M867	EnsemblPlants:KRH17159	ProteinID:KRH17159
ProteinID:KRH17159.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12374
PANTHER:PTHR12374:SF26	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00023D38B9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:46775998..46777307

Molecular Weight (calculated)

16762.8 Da

IEP (calculated)

10.048

GRAVY (calculated)

-0.859

Length

147 amino acids

Sequence
(BLAST)

001: MAGNRENAAA GANPIRVRRT HIRWTEEEHR RFLRGIELYG ASNVRDIAKN VVLTKTPAQV SSHAQKYFQR QKSGKKARPS IFDIEPVVAQ PQNIHDSEPV
101: VEQPQNIHHR EPVVEQPHNA ELPEQPIQQG LNQPNNIITN DFLANFK

Best Arabidopsis Sequence Match ( AT3G11280.1 )
(BLAST)

001: METLHPFSHL PISDHRFVVQ EMVSLHSSSS GSWTKEENKM FERALAIYAE DSPDRWFKVA SMIPGKTVFD VMKQYSKLEE DVFDIEAGRV PIPGYPAASS
101: PLGFDTDMCR KRPSGARGSD QDRKKGVPWT EEEHRRFLLG LLKYGKGDWR NISRNFVVSK TPTQVASHAQ KYYQRQLSGA KDKRRPSIHD ITTGNLLNAN
201: LNRSFSDHRD ILPDLGFIDK DDTEEGVIFM GQNLSSENLF SPSPTSFEAA INFAGENVFS AGA

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C773]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.