Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plasma membrane 6
- extracellular 6
- endoplasmic reticulum 6
- golgi 5
- vacuole 6
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03647 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 74.89 | 89.47 |
| PGSC0003DMT400007468 | Potato | extracellular | 64.76 | 61.0 |
| VIT_11s0016g05840.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 65.2 | 55.64 |
| Solyc12g009650.1.1 | Tomato | nucleus | 62.56 | 53.58 |
| KRH04104 | Soybean | extracellular, plasma membrane | 38.33 | 48.88 |
| KRH57376 | Soybean | plasma membrane | 37.0 | 46.93 |
| Bra037196.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 50.22 | 44.88 |
| CDX81428 | Canola | endoplasmic reticulum, plasma membrane | 50.22 | 44.53 |
| Zm00001d002094_P001 | Maize | extracellular, plastid | 39.21 | 43.84 |
| CDY18576 | Canola | endoplasmic reticulum, plasma membrane | 51.1 | 41.43 |
| AT2G10940.2 | Thale cress | endoplasmic reticulum, plasma membrane | 51.54 | 40.21 |
| Zm00001d026436_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 35.24 | 39.22 |
| EES12957 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 37.44 | 39.17 |
| Os04t0644400-01 | Rice | nucleus | 30.84 | 38.46 |
| TraesCS2B01G546700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 40.97 | 33.21 |
| KRG90032 | Soybean | extracellular | 45.81 | 31.71 |
| TraesCS2D01G519700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 40.09 | 31.49 |
| TraesCS2A01G518100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 40.09 | 31.16 |
| KRH17654 | Soybean | extracellular | 51.98 | 30.73 |
| HORVU2Hr1G114680.2 | Barley | endoplasmic reticulum | 40.09 | 21.72 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.2 | EMBL:ACUP02008243 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | EnsemblPlantsGene:GLYMA_13G160400 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Hydrophob_seed | UniProt:I1LZR2 | EnsemblPlants:KRH20158 |
| ProteinID:KRH20158 | ProteinID:KRH20158.1 | PFAM:PF14547 | PANTHER:PTHR31731 | PANTHER:PTHR31731:SF54 | SMART:SM00499 |
| SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000233B390 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr13:-:27606020..27608359
Molecular Weight (calculated)
23486.8 Da
IEP (calculated)
8.937
GRAVY (calculated)
0.401
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSKIYAYL FLCMLFLSSA TPILGCGYCG KPPKKHKPGK TPKTPTVPVV KPPVTIPPIV KPPVTIPPIV NPPVTIPPIV NPPVTIPPIV NPPVTVPPVV
101: LPPIVKPPGF LPPILNPPST PTPSPGKGGN TPCPPPKSPA QATCPIDTLK LGACVDLLGG LVHIGLGDPV ANQCCPVLQG LVELEAAVCL CTTLKLKLLN
201: LNIYVPLALQ LLVACGKSPP PGYTCSL
101: LPPIVKPPGF LPPILNPPST PTPSPGKGGN TPCPPPKSPA QATCPIDTLK LGACVDLLGG LVHIGLGDPV ANQCCPVLQG LVELEAAVCL CTTLKLKLLN
201: LNIYVPLALQ LLVACGKSPP PGYTCSL
001: MDSSKLSSLS LCLFLICIIY LPQHSLACGS CNPRKGGKHS PKAPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTIPKLPVPP VTVPKLPVPP
101: VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPLPP ISGLPIPPVV GPNLPLPPLP IVGPILPPGT TPPATGGKDC PPPPGSVKPP
201: SGGGKATCPI DTLKLGACVD LLGGLVKIGL GDPAVNKCCP LLKGLVEVEA AACLCTTLKL KALDLNLYVP VALQLLLTCG KNPPPGYTCS I
101: VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPLPP ISGLPIPPVV GPNLPLPPLP IVGPILPPGT TPPATGGKDC PPPPGSVKPP
201: SGGGKATCPI DTLKLGACVD LLGGLVKIGL GDPAVNKCCP LLKGLVEVEA AACLCTTLKL KALDLNLYVP VALQLLLTCG KNPPPGYTCS I
Arabidopsis Description
At2g10940/F15K19.1 [Source:UniProtKB/TrEMBL;Acc:Q9SKI0]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.