CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10601
KRH21766
KRH42098
KRH49811

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	KRH10601	AT5G09540.1	21798944
AT1G73100.1	KRH21766	AT5G09540.1	21798944
AT1G73100.1	KRH42098	AT5G09540.1	21798944
AT1G73100.1	KRH49811	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13229	Soybean	nucleus	93.91	93.91
KRH56252	Soybean	nucleus	22.73	71.83
KRH62706	Soybean	nucleus	68.2	68.82
Bra009408.1-P	Field mustard	nucleus	43.69	57.42
VIT_13s0047g00120.t01	Wine grape	nucleus	58.69	55.17
Bra005829.1-P	Field mustard	nucleus	51.56	53.8
Bra028776.1-P	Field mustard	nucleus	50.37	53.39
AT5G04940.2	Thale cress	nucleus	52.3	52.54
Bra009409.1-P	Field mustard	nucleus	50.52	51.13
AT1G73100.1	Thale cress	nucleus	50.67	50.97
Bra016018.1-P	Field mustard	nucleus	49.78	49.48
KRH66648	Soybean	nucleus	47.99	45.62
TraesCS1B01G319000.1	Wheat	nucleus	42.94	42.88
Os05t0490700-01	Rice	extracellular	42.79	42.86
Zm00001d010646_P001	Maize	plastid	41.16	42.48
TraesCS1B01G378900.1	Wheat	nucleus	42.5	42.43
TraesCS1D01G366800.1	Wheat	nucleus	42.5	42.31
GSMUA_Achr5P27620_001	Banana	nucleus	38.78	42.23
Os12t0128450-00	Rice	nucleus	38.48	42.18
TraesCS1A01G362000.1	Wheat	nucleus	42.2	42.01
KRG95012	Soybean	plastid	30.46	42.01
TraesCS1D01G307700.1	Wheat	nucleus	42.05	41.99
TraesCS1A01G308300.1	Wheat	nucleus	41.9	41.84
Zm00001d038541_P002	Maize	nucleus	42.64	41.47
EES19725	Sorghum	nucleus	41.46	41.39
Os11t0131600-00	Rice	nucleus	40.71	41.27
TraesCS4B01G280000.1	Wheat	nucleus	43.83	40.69
EES01635	Sorghum	nucleus	42.64	38.68
TraesCS5A01G140500.1	Wheat	nucleus	38.93	38.42
TraesCS5D01G152000.1	Wheat	nucleus	39.23	38.37
Zm00001d041005_P001	Maize	nucleus	39.52	38.05
Os01t0811300-01	Rice	nucleus, plasma membrane	41.6	38.04
TraesCS3A01G385200.1	Wheat	plastid	41.01	38.02
Os11t0602200-01	Rice	nucleus	45.62	37.76
TraesCS5B01G138800.1	Wheat	nucleus	39.23	37.18
TraesCS3B01G366900.1	Wheat	nucleus	41.01	37.15
TraesCS3B01G367200.1	Wheat	nucleus	41.01	37.15
TraesCS3D01G329100.1	Wheat	nucleus	40.56	36.74
EER96081	Sorghum	nucleus	45.02	36.51
OQU78645	Sorghum	nucleus	40.42	36.46
TraesCS3A01G336100.1	Wheat	nucleus	40.27	36.38
TraesCS4D01G278500.1	Wheat	nucleus	44.13	36.26
EES10399	Sorghum	nucleus	44.13	36.26
Zm00001d019195_P001	Maize	nucleus	45.62	35.86
TraesCS4A01G023500.1	Wheat	nucleus	44.28	35.73
Zm00001d043135_P003	Maize	nucleus	41.31	35.69
TraesCS3B01G417400.1	Wheat	nucleus	43.69	35.29
TraesCS3D01G378200.1	Wheat	plastid	33.43	32.85
KRH49479	Soybean	nucleus	32.69	31.03
KRG90121	Soybean	nucleus	25.11	30.62
KRG89164	Soybean	nucleus	32.39	30.45
KRG94709	Soybean	nucleus	13.22	29.57
KRH07636	Soybean	nucleus	25.26	29.57
KRH76344	Soybean	nucleus	14.12	28.7
KRH35283	Soybean	nucleus	5.65	26.57
KRG91550	Soybean	nucleus	13.37	26.09
KRH20251	Soybean	nucleus, plastid	25.26	25.68
KRH39353	Soybean	nucleus	15.01	25.12
KRH06819	Soybean	nucleus	26.6	24.86
KRH28192	Soybean	nucleus	32.84	19.98
KRH77297	Soybean	nucleus	31.8	19.8
KRH77260	Soybean	nucleus	14.12	19.51
KRH28232	Soybean	nucleus	13.97	19.22
KRH68776	Soybean	nucleus	16.2	16.1
KRH34133	Soybean	nucleus	16.34	16.04
KRG97025	Soybean	nucleus	6.69	15.85
KRH67447	Soybean	nucleus	16.94	15.72
KRG92731	Soybean	nucleus	16.49	15.57
KRG95723	Soybean	nucleus	15.9	14.78
KRH19618	Soybean	nucleus	17.38	14.23
KRH32246	Soybean	nucleus	16.94	13.89
KRH28566	Soybean	nucleus	19.91	9.27
KRH76897	Soybean	nucleus	20.21	9.12
KRH08338	Soybean	nucleus	19.02	8.56
KRH69981	Soybean	nucleus	18.43	8.3
KRH67444	Soybean	cytosol	0.15	3.85
HORVU6Hr1G090170.1	Barley	cytosol	0.15	0.8

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100800651	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10
EMBL:ACUP02008280	EnsemblPlantsGene:GLYMA_13G186800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	UniProt:I1M0I3	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728
InterPro:IPR025794	InterPro:IPR036987	ProteinID:KRH20575.1	EnsemblPlants:KRH20576	ProteinID:KRH20576	ProteinID:KRH20576.1
ProteinID:KRH20577.1	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867
PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF415	InterPro:PUA-like_sf
InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00466	SMART:SM00468
InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI000233D78A	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:30049481..30055924

Molecular Weight (calculated)

74958.8 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.505

Length

673 amino acids

Sequence
(BLAST)

001: MEEGLCQNSI PGSGFVDKTR IVEAKPLRSL APVLPKSLQS SFSGRYPSVF PPFVLFDEPQ ESQPSPAPMP APLRSYRNPL DEEEAPHGSN GETSSPMEGL
101: NGNSVDNSQK RAVPPMHSCK YSQKRSKKTK ESQFDLSPSV GGISVATRED GDRELVNLVL MTYDSLRRRL CQLEDAKELN TTMAIKRADL RASNAMTVKA
201: FRTNTRRRVG AVPGVEIGDI FFLRMEMCLV GLHGQSMSGI DYMTIKDELQ EEPVALSIVS SGVYDNDAED NDVLIYTGQG ENFNKKDKHV IDQKLQRGNL
301: ALDRSSRRHN EVRVIRGLRD AANKNAKIYV YDGLYKIQDS WIERGKSGGG VFKYKFVRLP GQSSAFAVWK SVQKWKMSSS TSSRTGIILA DLSTGVESIP
401: VSLVNEVDNE KGPSFFTYFH SLRDPKPFSL AQSSYGCNCN KTCVPGDLSC SCIQRNEGDF PYTANGVLVS RKPLVHECGP LCKCFPNCKN RVSQTGLKHQ
501: MEVFKTKDRG WGLRSLDPIR AGTFICEYAG EVIDIAKVNK NRGYDDEYVF DTSRIYDTFK WNYEPSLLEE ISSNVSSEDY DIPSPLIISS KKFGNVARYM
601: NHSCSPNVFW QPVLYAENNQ SFLHIAFFAL RHIPPMTELT YDYGCSGHAD GSSAPKGRKK CSCGSSKCRG SFG

Best Arabidopsis Sequence Match ( AT1G17770.1 )
(BLAST)

001: MDKSIPIKAI PVACVRPDLV DDVTKNTSTI PTMVSPVLTN MPSATSPLLM VPPLRTIWPS NKEWYDGDAG PSSTGPIKRE ASDNTNDTAH NTFAPPPEMV
101: IPLITIRPSD DSSNYSCDAG AGPSTGPVKR GRGRPKGSKN STPTEPKKPK VYDPNSLKVT SRGNFDSEIT EAETETGNQE IVDSVMMRFD AVRRRLCQIN
201: HPEDILTTAS GNCTKMGVKT NTRRRIGAVP GIHVGDIFYY WGEMCLVGLH KSNYGGIDFF TAAESAVEGH AAMCVVTAGQ YDGETEGLDT LIYSGQGGTD
301: VYGNARDQEM KGGNLALEAS VSKGNDVRVV RGVIHPHENN QKIYIYDGMY LVSKFWTVTG KSGFKEFRFK LVRKPNQPPA YAIWKTVENL RNHDLIDSRQ
401: GFILEDLSFG AELLRVPLVN EVDEDDKTIP EDFDYIPSQC HSGMMTHEFH FDRQSLGCQN CRHQPCMHQN CTCVQRNGDL LPYHNNILVC RKPLIYECGG
501: SCPCPDHCPT RLVQTGLKLH LEVFKTRNCG WGLRSWDPIR AGTFICEFAG LRKTKEEVEE DDDYLFDTSK IYQRFRWNYE PELLLEDSWE QVSEFINLPT
601: QVLISAKEKG NVGRFMNHSC SPNVFWQPIE YENRGDVYLL IGLFAMKHIP PMTELTYDYG VSCVERSEED EVLLYKGKKT CLCGSVKCRG SFT

Arabidopsis Description

SUVH7Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.