CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25865	Soybean	cytosol	18.3	58.5
KRH27097	Soybean	cytosol, mitochondrion	89.79	55.89
KRG88500	Soybean	cytosol	10.85	54.84
KRH55647	Soybean	cytosol	48.72	49.35
VIT_19s0014g05230.t01	Wine grape	cytosol	53.4	42.76
KRH25868	Soybean	cytosol, nucleus, plastid	23.62	39.93
PGSC0003DMT400049471	Potato	cytosol	36.17	39.44
GSMUA_Achr1P26200_001	Banana	extracellular	28.51	37.75
Os02t0132600-02	Rice	cytosol	37.87	32.96
Solyc07g064110.2.1	Tomato	plastid	46.81	25.88
Bra013567.1-P	Field mustard	cytosol, mitochondrion	41.28	24.9
Bra029518.1-P	Field mustard	plastid	39.15	24.21
CDX79101	Canola	cytosol, mitochondrion	41.7	23.7
AT4G04790.1	Thale cress	cytosol, mitochondrion	40.21	23.02
AT4G21880.1	Thale cress	cytosol	40.85	22.78
CDY16646	Canola	plastid	39.15	22.47
CDX82873	Canola	cytosol, mitochondrion	40.85	22.4
CDX94576	Canola	plastid	38.94	22.18
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	37.23	20.3
TraesCS6D01G087600.1	Wheat	cytosol, plastid	37.23	20.3
TraesCS6B01G124900.1	Wheat	cytosol, plastid	37.23	20.09
HORVU6Hr1G017720.35	Barley	plastid	36.6	19.37
Zm00001d015156_P001	Maize	plastid	38.09	18.68
OQU84311	Sorghum	mitochondrion	38.72	18.59
KRG88502	Soybean	vacuole	9.57	11.94
GSMUA_Achr1P26220_001	Banana	plastid	7.23	7.98
KRH55650	Soybean	mitochondrion, plastid	5.32	6.46

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100785657	MapMan:35.1	EMBL:ACUP02008397	EnsemblPlantsGene:GLYMA_13G287400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7M2H2	EnsemblPlants:KRH22239	ProteinID:KRH22239	ProteinID:KRH22239.1
PFAM:PF01535	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002962F2E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:38779461..38786945

Molecular Weight (calculated)

53360.5 Da

IEP (calculated)

4.731

GRAVY (calculated)

-0.023

Length

470 amino acids

Sequence
(BLAST)

001: MKEILKLLEI IDIKNLSSAE SVAKVFQALG RLLLEPLAEK FLLDFKTSDH EADNITNFIA SYAVSIPDLS IRNISQMVLI ISVEDVIKKF KDLHQRLEVS
101: PSSSSYEKLI LHSCALLEVH VALDIVDEMC EAGLTLSTKA LHSILQICDD TSEYNLVHRI FSTIRHYNLE SDDETFRSMI DFFLKMKDIE GAYKMLDDLE
201: ELNLKLTPGM YNAIMAECFQ EKNISDGVRV LEHMQCADVK PDSQTFSCLI SNSETKEDIA KYYEELKQSG IVATKQIFMA LINAYAACGQ LEKAKKVILD
301: PLIPPKSLNQ IKGFLVSVLA SHGQLSGALV IYDKIKQSGH KLEAKEITSL IEHTHSEGEL DRLLLLLEEL DDTDYWNDAC CRIILYCIWN KHLSSAVELC
401: NLLMDKFQSD EQVMEFLFDK VFSLIEESSH LHTFLELLSE IKDKLGLLPS QKRHDSLLRV TATDLHDSDF

Best Arabidopsis Sequence Match ( AT4G21880.1 )
(BLAST)

001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.