CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88500	Soybean	cytosol	62.59	98.92
KRH55647	Soybean	cytosol	86.39	27.37
KRH22239	Soybean	cytosol	58.5	18.3
PGSC0003DMT400049471	Potato	cytosol	51.02	17.4
VIT_19s0014g05230.t01	Wine grape	cytosol	57.14	14.31
GSMUA_Achr1P26200_001	Banana	extracellular	33.33	13.8
Os02t0132600-02	Rice	cytosol	42.18	11.48
KRH27097	Soybean	cytosol, mitochondrion	58.5	11.39
Solyc07g064110.2.1	Tomato	plastid	54.42	9.41
Bra013567.1-P	Field mustard	cytosol, mitochondrion	44.9	8.47
AT4G21880.1	Thale cress	cytosol	48.3	8.42
Bra029518.1-P	Field mustard	plastid	43.54	8.42
AT4G04790.1	Thale cress	cytosol, mitochondrion	46.26	8.28
CDX79101	Canola	cytosol, mitochondrion	45.58	8.1
CDX94576	Canola	plastid	43.54	7.76
CDX82873	Canola	cytosol, mitochondrion	44.9	7.7
CDY16646	Canola	plastid	42.86	7.69
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	42.18	7.19
TraesCS6D01G087600.1	Wheat	cytosol, plastid	42.18	7.19
TraesCS6B01G124900.1	Wheat	cytosol, plastid	42.18	7.12
HORVU6Hr1G017720.35	Barley	plastid	42.18	6.98
Zm00001d015156_P001	Maize	plastid	42.18	6.47
OQU84311	Sorghum	mitochondrion	42.86	6.44
GSMUA_Achr1P26220_001	Banana	plastid	2.72	0.94
KRG88502	Soybean	vacuole	0.0	0.0
KRH25868	Soybean	cytosol, nucleus, plastid	0.0	0.0
KRH55650	Soybean	mitochondrion, plastid	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0HE73	EMBL:ACUP02007367	EnsemblPlantsGene:GLYMA_12G135400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH25865	ProteinID:KRH25865
ProteinID:KRH25865.1	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006ED7830	:	:

Description

hypothetical protein

Coordinates

chr12:+:15798632..15801316

Molecular Weight (calculated)

17130.0 Da

IEP (calculated)

5.646

GRAVY (calculated)

0.019

Length

147 amino acids

Sequence
(BLAST)

001: MQVGVALDIV EKMCEAGFTL STEVLQYILQ ICEESYEYVL VHQIYSIICH YHLELNGEIC RCLVHFFVRM KDFEGAFRMI ADLEDMNFKP TTNMYNAIMA
101: GYFREKNISG VLRVLKKMRG ANVKPDSQTF SYLIRNCEKE EDIMKVA

Best Arabidopsis Sequence Match ( AT4G21880.1 )
(BLAST)

001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.