CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55647	Soybean	cytosol	85.97	51.51
GSMUA_Achr1P26200_001	Banana	extracellular	46.4	36.34
PGSC0003DMT400049471	Potato	cytosol	55.04	35.5
VIT_19s0014g05230.t01	Wine grape	cytosol	58.99	27.94
KRH22239	Soybean	cytosol	39.93	23.62
Os02t0132600-02	Rice	cytosol	44.24	22.78
Solyc07g064110.2.1	Tomato	plastid	52.52	17.18
AT4G04790.1	Thale cress	cytosol, mitochondrion	46.4	15.71
KRH27097	Soybean	cytosol, mitochondrion	41.73	15.36
CDX94576	Canola	plastid	44.96	15.15
CDY16646	Canola	plastid	43.88	14.9
CDX79101	Canola	cytosol, mitochondrion	43.17	14.51
AT4G21880.1	Thale cress	cytosol	43.88	14.47
CDX82873	Canola	cytosol, mitochondrion	43.17	14.0
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	42.45	13.69
HORVU6Hr1G017720.35	Barley	plastid	43.53	13.63
TraesCS6D01G087600.1	Wheat	cytosol, plastid	42.09	13.57
TraesCS6B01G124900.1	Wheat	cytosol, plastid	41.73	13.32
Bra029518.1-P	Field mustard	plastid	35.61	13.03
Bra013567.1-P	Field mustard	cytosol, mitochondrion	36.33	12.97
Zm00001d015156_P001	Maize	plastid	43.88	12.73
OQU84311	Sorghum	mitochondrion	44.24	12.56
GSMUA_Achr1P26220_001	Banana	plastid	2.16	1.41
KRH55650	Soybean	mitochondrion, plastid	1.08	0.78
KRG88502	Soybean	vacuole	0.0	0.0
KRH25865	Soybean	cytosol	0.0	0.0
KRG88500	Soybean	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02007369	EnsemblPlantsGene:GLYMA_12G135500	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7LUK9	ProteinID:KRH25866.1	ProteinID:KRH25867.1
EnsemblPlants:KRH25868	ProteinID:KRH25868	ProteinID:KRH25868.1	ProteinID:KRH25869.1	ProteinID:KRH25870.1	PFAM:PF01535
PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002949B75
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:15830215..15834878

Molecular Weight (calculated)

31091.0 Da

IEP (calculated)

6.905

GRAVY (calculated)

0.023

Length

278 amino acids

Sequence
(BLAST)

001: MALINSYAAS GKMEKAKQVV LDPIIPNKSL NEIKSVLVSA LASHGQLSEA LLVYEEIKKA GHNLRPKAVI TLIEELTKFN GELDGLLLLL EEISDLDYWV
101: DGCFKVIMYC IRNKNLSSAI VLFKQLKDKF KNDEIVTEAL FDAVFSLIAV SEFTHLQIGL DLLWAIKDEL GLMASRQCLD FLLSACANAG DLNNARLIWR
201: EYEVAGFPYN VLSYLRMYQA LLAAGDDTSA HLILKKIPQD DAEICSVIIA CQETYNGLNS VEEKKKQGKK RKKKKSKT

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.