CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22239	Soybean	cytosol	55.89	89.79
KRH25865	Soybean	cytosol	11.39	58.5
KRG88500	Soybean	cytosol	6.75	54.84
KRH55647	Soybean	cytosol	31.39	51.08
VIT_19s0014g05230.t01	Wine grape	cytosol	36.42	46.85
KRH25868	Soybean	cytosol, nucleus, plastid	15.36	41.73
PGSC0003DMT400049471	Potato	cytosol	23.05	40.37
Solyc07g064110.2.1	Tomato	plastid	43.84	38.94
GSMUA_Achr1P26200_001	Banana	extracellular	18.01	38.31
KRG88502	Soybean	vacuole	18.28	36.6
Bra013567.1-P	Field mustard	cytosol, mitochondrion	36.95	35.82
Bra029518.1-P	Field mustard	plastid	35.76	35.53
AT4G04790.1	Thale cress	cytosol, mitochondrion	36.95	33.98
CDX79101	Canola	cytosol, mitochondrion	37.09	33.86
KRH55650	Soybean	mitochondrion, plastid	17.22	33.59
Os02t0132600-02	Rice	cytosol	23.97	33.52
AT4G21880.1	Thale cress	cytosol	37.09	33.21
CDY16646	Canola	plastid	35.76	32.97
CDX82873	Canola	cytosol, mitochondrion	37.22	32.79
CDX94576	Canola	plastid	35.63	32.61
GSMUA_Achr1P26220_001	Banana	plastid	17.75	31.46
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	33.64	29.47
TraesCS6D01G087600.1	Wheat	cytosol, plastid	33.51	29.35
TraesCS6B01G124900.1	Wheat	cytosol, plastid	33.51	29.05
HORVU6Hr1G017720.35	Barley	plastid	32.98	28.04
OQU84311	Sorghum	mitochondrion	34.44	26.56
Zm00001d015156_P001	Maize	plastid	32.85	25.89

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100306302	MapMan:35.1	EMBL:ACUP02007772	EnsemblPlantsGene:GLYMA_12G214200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7LW88	EnsemblPlants:KRH27097	ProteinID:KRH27097	ProteinID:KRH27097.1
PFAM:PF01535	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233CB92	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:37351424..37363980

Molecular Weight (calculated)

85741.6 Da

IEP (calculated)

4.815

GRAVY (calculated)

-0.266

Length

755 amino acids

Sequence
(BLAST)

001: MQVRYSYVRR LCSVLGSPSA KRGTTKTQSS SSSLAKLFVD DDSTLSSLKL KRPSDSGDSS NGVFKHISSI FYADKSAKKP DSEEIDGEKK FENMSNLSWL
101: SSVSQSNVLL QWKEQSRKKK QKCVFDFTQE SRFQKLVEVC ARILGPEATI ELFGKVGREP DVKGYNTLVE MCIDKARGTD DKDIAIQELG KVFNLFKSMR
201: EQGLELQEQT YRPLLLYLID MCMVEEFQFF CVVIEDENPS SVARLGYYEM LMWLKDNNEE KIQGICDNIA ENKGEDTSDI QENYLLALCE SERMEEILKL
301: LEIIDIKNLS SAESVAKVFQ ALGRLLLEPV AEKFLLDFKT SDHEADNITD FIASYAVSIP DLSVKDVIKK FKDLHQRLEV SPSSSSYEKL ILHSCALLKV
401: HVALDIVDEM CEAGLTLSTK VLHSILQICD DTSEYNLVHR IFSTIHRYNL ESNDETFRSM IDLFLKMKDI EGAYKMLDDL GKLNLKPSPG MYNAILEECF
501: REKNISDGVR VLEHMQCADV KPDSQTFSYL ISNSETEEDI VKYYEELKQS GIVATKQIFM ALVNAYAACG QLEKAKKVIL DPLIPPKSLN QIKGFLVSVL
601: ASHGKLSEAL VIYEEIKQSG HKLEAKEVTS LIEHTHSEGE LDRLLLLLKE LDDTDYWNDA CCRIILYCIW NKHLSSAVEL CNLLKDKFQS DEQVMEFLFD
701: KVFSLIEESE ESSHLHTCSE LLSEIKDKLG LLPSHKRHDS LLCACANATD LHDSE

Best Arabidopsis Sequence Match ( AT4G04790.3 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHDK SSLEKNLFLK IPSFTTKIPY DISLRTKELS
101: RERKERRVYK QNGLSRRFAK IFRDSAQKLG TEAMFGAFDR VAKEMSVTEY NAMIGVYLEH AEKSNDLDYA LGHIEKAFEL LKSMRDRGFL IEERVYGPLL
201: GYLIGMDMVD EFHSFKDVIR EASPGSVERL GYYEMLLWIH LGDGEKIEEL CSTIDGDNGE SLSVLQENYL LALCKKDQKY HLERLLEIVD ITKVRSSDLL
301: ANIFEYLGRF SLDSVASRFL WELRESDEGV KNVSDLISIY STCTPNPTVE DTILKFNKMH EELDVMPSST SYEKLVKYSC DSNEVVTALD VVEKMGEAGL
401: MISADILHSL LHAIDEVLEF DLVRRIHSIM CTKSVKPNTE NFRSIIRLCT RIKDFEGAYN MLGNLKNFNL EPNSSMFNCI LAGYFREKNV SSALMVVKQM
501: KEAGVKPDSI TFGYLINNCT QEDAITKYYE EMKQAGVQAT KRIYMSLIDA YAASGKFEKA KQVLVDPDVP AINQNELKSV LISALASRGK WADALHIYEE
601: MRKAECHVDP KSIISLIEYS DSKGELSTLV QLADDLQDDT SWIDGFFRMI LFAVRNKKSS DIVDLLKRNK VRLLKKGIPV EAHFDEVFWA IAETEPSKVH
701: LGMDLLRFMK DELGFVPSRK CLDFLLHACV NAKDLEHGLL VWKEYQSAAF PCNVLSFLRM YQVLLAAGDS EGAKALVSKI PKDDKDVQHI IEESQSAFSQ
801: APNKKKPKKK MIVLSTK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.