Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77000 | Soybean | nucleus | 93.07 | 93.75 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 76.09 | 75.54 |
| Solyc02g090850.2.1 | Tomato | nucleus | 72.08 | 70.41 |
| PGSC0003DMT400010353 | Potato | nucleus | 71.72 | 70.05 |
| Bra011736.1-P | Field mustard | nucleus | 68.25 | 68.5 |
| CDX75625 | Canola | nucleus | 68.25 | 68.37 |
| GSMUA_Achr6P10170_001 | Banana | nucleus | 66.61 | 67.84 |
| AT4G36980.4 | Thale cress | nucleus | 68.25 | 67.27 |
| Os03t0395900-02 | Rice | nucleus | 63.14 | 65.16 |
| TraesCS4D01G149700.1 | Wheat | nucleus | 61.86 | 63.96 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 61.68 | 63.65 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 61.13 | 63.45 |
| GSMUA_Achr10P... | Banana | nucleus | 57.66 | 63.33 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 62.04 | 61.71 |
| Zm00001d029426_P024 | Maize | nucleus | 62.96 | 58.57 |
| CDX69275 | Canola | nucleus | 62.23 | 58.29 |
| OQU92461 | Sorghum | nucleus | 64.42 | 54.81 |
Protein Annotations
| EMBL:ACUP02006753 | EnsemblPlants:KRH28473 | EnsemblPlantsGene:GLYMA_11G056000 | EntrezGene:100779007 | InterPro:SWAP_N_domain | ncoils:Coil |
| PANTHER:PTHR13161 | PANTHER:PTHR13161:SF4 | PFAM:PF09750 | ProteinID:KRH28473 | ProteinID:KRH28473.1 | SEG:seg |
| SMART:SM01141 | UniParc:UPI000233C518 | UniProt:I1LHE7 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr11:-:4234567..4239763
Molecular Weight (calculated)
63638.7 Da
IEP (calculated)
10.423
GRAVY (calculated)
-1.429
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSEK KVHDMMDAAR KRAQRRAVYL AKRRGDPQQS IQLVGFPSRT YRDDALYQAS QDQQGLIPWN GKQDVLIDRF DGRALLDFVR DSSHRRAPEK
101: SEEEEELEEF VNFERYRDLI KHRRRGFTDE EALEHVNQEM EAKAAAPFTS DRSNLLQPAA SKGSYSQVRF SYDGNGKEET HISDDEDNDN EEDEDDEDDE
201: DFNSDDSNDE GMEIIAKEYG VKRYGWLVYM DKKAKEEEKR QKELIKGDPA IRKLSRKERR KASQIERERE REATRISGTR VLHHDPYRET RQSPTYEAYS
301: RSRRSRSRSR SYSPSHSRRY SCSGHSDDIH RSKPRTPKIE YITEFGGSGA AADEPRPEGF SPPRSPTSQV DLLNRPTSSC ILEALHVDPA SGVSIDKDKG
401: TKVLKPSVSG SSALAKLKTG GSGGPLKQQG EKKETPQERL KRIMNKQLNK QIKKDTAAEL AKKREQERQR QEKLAETSRL SRYRHHSRSR SRSFSRSPPR
501: RYRRSRSPSS RGSRRYYSSS RSPSRPRSRS RSRSPYSRSP RIRNRSRH
101: SEEEEELEEF VNFERYRDLI KHRRRGFTDE EALEHVNQEM EAKAAAPFTS DRSNLLQPAA SKGSYSQVRF SYDGNGKEET HISDDEDNDN EEDEDDEDDE
201: DFNSDDSNDE GMEIIAKEYG VKRYGWLVYM DKKAKEEEKR QKELIKGDPA IRKLSRKERR KASQIERERE REATRISGTR VLHHDPYRET RQSPTYEAYS
301: RSRRSRSRSR SYSPSHSRRY SCSGHSDDIH RSKPRTPKIE YITEFGGSGA AADEPRPEGF SPPRSPTSQV DLLNRPTSSC ILEALHVDPA SGVSIDKDKG
401: TKVLKPSVSG SSALAKLKTG GSGGPLKQQG EKKETPQERL KRIMNKQLNK QIKKDTAAEL AKKREQERQR QEKLAETSRL SRYRHHSRSR SRSFSRSPPR
501: RYRRSRSPSS RGSRRYYSSS RSPSRPRSRS RSRSPYSRSP RIRNRSRH
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLRHR
501: RSRSRSGSRS RRSRRHSSRS RSRSPSRSLS RSPKRSRRRS PSYSRSPRRR SSRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLRHR
501: RSRSRSGSRS RRSRRHSSRS RSRSPSRSLS RSPKRSRRRS PSYSRSPRRR SSRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.