CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49811	Soybean	nucleus	78.46	75.8
KRH10601	Soybean	nucleus	57.14	52.31
KRH21766	Soybean	nucleus	56.26	51.3
Bra031921.1-P	Field mustard	cytosol	36.48	44.99
CDY31322	Canola	cytosol	36.48	44.5
KRH62217	Soybean	cytosol, nucleus	23.3	43.09
VIT_03s0017g00300.t01	Wine grape	nucleus	44.62	41.77
AT5G09540.1	Thale cress	nucleus	25.49	41.43
CDY21586	Canola	cytosol	25.05	39.45
AT5G64360.7	Thale cress	nucleus	40.22	39.44
Bra009389.1-P	Field mustard	cytosol	25.05	38.91
CDY69792	Canola	cytosol	25.05	38.91
Bra024289.1-P	Field mustard	nucleus	37.36	37.04
CDX84519	Canola	nucleus	38.46	36.84
KRH72458	Soybean	nucleus	26.59	34.77
CDY58269	Canola	nucleus	37.58	34.06
KRG99455	Soybean	nucleus	18.24	31.92
KRH16845	Soybean	nucleus	25.49	31.87
GSMUA_Achr3P06790_001	Banana	cytosol	22.64	31.69
CDY46799	Canola	nucleus	27.25	31.63
KRG89389	Soybean	extracellular	10.11	30.67
Solyc07g007230.2.1	Tomato	nucleus	28.57	30.52
KRH45560	Soybean	nucleus	17.58	30.19
KRH69663	Soybean	nucleus	18.9	28.96
PGSC0003DMT400073845	Potato	cytosol	40.66	28.37
Zm00001d047214_P001	Maize	extracellular	24.62	28.21
Solyc11g006170.1.1	Tomato	nucleus	40.0	28.04
GSMUA_Achr1P21390_001	Banana	cytosol	24.84	28.04
TraesCS4D01G156000.1	Wheat	nucleus	24.18	27.43
HORVU4Hr1G039650.1	Barley	nucleus	23.96	27.39
EER92178	Sorghum	nucleus	24.18	27.3
TraesCS4B01G160100.1	Wheat	cytosol	23.96	27.18
Os09t0463700-01	Rice	nucleus	22.2	27.15
GSMUA_Achr10P...	Banana	cytosol	25.05	27.08
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	23.08	26.52
TraesCS4A01G160900.1	Wheat	cytosol	23.3	26.5
PGSC0003DMT400079004	Potato	cytosol	29.67	26.42
Solyc01g105780.2.1	Tomato	nucleus	40.88	25.94
Os03t0392400-01	Rice	nucleus	23.08	25.93
Os07t0620200-01	Rice	cytosol, mitochondrion, nucleus	22.42	25.76
Solyc11g006140.1.1	Tomato	nucleus	33.63	25.71
Zm00001d022168_P001	Maize	cytosol, mitochondrion, peroxisome	24.84	25.57
KXG36712	Sorghum	cytosol	23.96	25.06
Zm00001d047043_P001	Maize	nucleus	23.74	24.94
PGSC0003DMT400083794	Potato	nucleus	40.0	24.5
TraesCS2B01G191300.1	Wheat	cytosol	20.88	24.23
EES14021	Sorghum	nucleus	23.52	24.21
HORVU2Hr1G030250.2	Barley	cytosol	20.66	24.16
TraesCS2D01G172200.1	Wheat	cytosol	20.66	24.04
TraesCS2A01G165100.1	Wheat	cytosol	20.66	24.04
KXG35797	Sorghum	nucleus	20.0	23.7
HORVU5Hr1G055620.1	Barley	cytosol, nucleus, plastid	13.85	21.28
Zm00001d020762_P001	Maize	nucleus	20.22	20.91
TraesCS5B01G242900.1	Wheat	cytosol	21.1	18.22
KRH74501	Soybean	nucleus	19.34	18.14
HORVU5Hr1G069570.1	Barley	nucleus	21.76	18.13
TraesCS5D01G252200.1	Wheat	cytosol, nucleus, plastid	20.66	17.84
TraesCS5A01G245400.1	Wheat	cytosol, nucleus, plastid	19.78	17.05
Bra027007.1-P	Field mustard	nucleus	26.81	16.35
CDY45966	Canola	nucleus	26.59	16.26
AT1G62970.1	Thale cress	nucleus	28.35	16.19
CDY45473	Canola	nucleus	26.15	15.91

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100788733	MapMan:12.5.1.16.2	EMBL:ACUP02004788	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
EnsemblPlantsGene:GLYMA_08G068300	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
UniProt:I1KQZ0	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH42098	ProteinID:KRH42098
ProteinID:KRH42098.1	PFAM:PF00226	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR45496	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI00029600EC	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:5240385..5243581

Molecular Weight (calculated)

50307.3 Da

IEP (calculated)

8.088

GRAVY (calculated)

-0.750

Length

455 amino acids

Sequence
(BLAST)

001: MDGGNRPEAE RWLYTANKLL SARDLHGARS FAIRARESDP TYDASEHLLT VIDTLLAGES RINDHHRDWY GILQILRYAT NMDHIAAQYR RLALLLDPHR
101: NMFAFASHAF SLVNDAWSVL SNSAKKAMYD SELRLLTAPA PPQHHPLPPQ PQPTPRRNPR SRDEPNPNRP ESAESSRQTR TVETDTGTSF WTSCPYCYVL
201: YEYPKVYEEC TLRCQSCRRG FHAVVIRSPP PLSGKDGSYC SWGFFPLGFS GNSKDVNGHA SNWNPFSPLF PCPLKGSSKR RPQRNWAYYD DDAAAAFIEL
301: SDPSDDDSGD GDWRVGKNRG RKRTRGKKNS GDGRREPVER TRRGAHVGND NVGSGASGNV NANAASAVLA GARGESSKKA ALGGLRRRGA GNLGKLDLNV
401: EFSNEVEEPS RGVHNREGNA AGHAEDNIEG IGFFEGLDEF LSSLPILNVV ADDKA

Best Arabidopsis Sequence Match ( AT5G64360.2 )
(BLAST)

001: MVGGRGGVGG GGGNRVEADQ WLVTSEKLLA SSDLQGAKTF AIRACEADPT RAEAADYILA ICDILLAGET RLGDSNLPDW YAVLRLGRLA QNPEHVATQY
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT

Arabidopsis Description

AT5G64360 protein [Source:UniProtKB/TrEMBL;Acc:Q9FMF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.