CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25865	Soybean	cytosol	27.37	86.39
KRH25868	Soybean	cytosol, nucleus, plastid	51.51	85.97
KRG88500	Soybean	cytosol	17.03	84.95
PGSC0003DMT400049471	Potato	cytosol	51.29	55.22
GSMUA_Achr1P26200_001	Banana	extracellular	40.3	52.68
KRH22239	Soybean	cytosol	49.35	48.72
VIT_19s0014g05230.t01	Wine grape	cytosol	58.19	46.0
Os02t0132600-02	Rice	cytosol	44.83	38.52
KRH27097	Soybean	cytosol, mitochondrion	51.08	31.39
Solyc07g064110.2.1	Tomato	plastid	53.88	29.41
AT4G04790.1	Thale cress	cytosol, mitochondrion	47.63	26.92
CDX79101	Canola	cytosol, mitochondrion	46.34	26.0
CDX94576	Canola	plastid	45.69	25.7
AT4G21880.1	Thale cress	cytosol	46.55	25.62
CDY16646	Canola	plastid	44.61	25.27
Bra029518.1-P	Field mustard	plastid	40.73	24.87
Bra013567.1-P	Field mustard	cytosol, mitochondrion	41.59	24.78
CDX82873	Canola	cytosol, mitochondrion	45.47	24.62
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	42.03	22.62
TraesCS6D01G087600.1	Wheat	cytosol, plastid	42.03	22.62
HORVU6Hr1G017720.35	Barley	plastid	42.46	22.18
TraesCS6B01G124900.1	Wheat	cytosol, plastid	41.38	22.04
Zm00001d015156_P001	Maize	plastid	43.53	21.09
OQU84311	Sorghum	mitochondrion	43.75	20.74
KRG88502	Soybean	vacuole	4.96	6.1
GSMUA_Achr1P26220_001	Banana	plastid	2.37	2.58
KRH55650	Soybean	mitochondrion, plastid	1.08	1.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0JY36	EMBL:ACUP02004031	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G268800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH55647	ProteinID:KRH55647
ProteinID:KRH55647.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0003DE84EE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:45753668..45791917

Molecular Weight (calculated)

53065.5 Da

IEP (calculated)

5.679

GRAVY (calculated)

-0.112

Length

464 amino acids

Sequence
(BLAST)

001: MHELLEVLPS TSSYEKLILH CCGLDKVGIA LDIVEKMCEA GFTLSTEVLQ CILQICEESY EYILVHRIYS IICRYHLELN GEICRRLVHF FVRMKDFEGA
101: YRMIADLEDM NFKPTTNMYN AIMAGYFREK NIRGGLRVLN QMRGANVKPD SHTFYYLIQN CETEEDIIKY CEEMKQSGVH ATKQIFMALI NSYAASGKLE
201: KAKQVVLDSN IPNKSLNEIK SVLVSALASH GQLSEALLVY EEIKKAGHNL EPKAVITLIE EFTKFNGELD GLLLLLEEMN DVDYWVDGCF KVIMYCIRNK
301: NLSSTILLFK QLKDKFKNDD LVMEALFDAV FSLIASSESS HLQIGLDLLW AIKDELGLMP SRQCLDFLLS ACANAGDLNN ARLIWREYEV AGFPYNVLSY
401: LRMYQALLAA GDDRSAHFML KKIPQDDAEV CSVIIACQET YNDLNSVEEK KKQGKRKKKK ERKE

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.