CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88502	Soybean	vacuole	64.6	66.31
GSMUA_Achr1P26220_001	Banana	plastid	32.56	29.58
KRH27097	Soybean	cytosol, mitochondrion	33.59	17.22
Solyc07g064110.2.1	Tomato	plastid	31.78	14.47
Bra013567.1-P	Field mustard	cytosol, mitochondrion	28.68	14.25
CDX79101	Canola	cytosol, mitochondrion	29.72	13.91
TraesCS6D01G087600.1	Wheat	cytosol, plastid	29.97	13.46
TraesCS6B01G124900.1	Wheat	cytosol, plastid	30.23	13.43
AT4G04790.1	Thale cress	cytosol, mitochondrion	27.91	13.15
CDX82873	Canola	cytosol, mitochondrion	28.94	13.07
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	28.68	12.88
Bra029518.1-P	Field mustard	plastid	24.81	12.63
HORVU6Hr1G017720.35	Barley	plastid	28.94	12.61
AT4G21880.1	Thale cress	cytosol	26.87	12.34
CDY16646	Canola	plastid	25.58	12.09
CDX94576	Canola	plastid	25.58	12.0
OQU84311	Sorghum	mitochondrion	29.2	11.54
Zm00001d015156_P001	Maize	plastid	28.17	11.38
VIT_19s0014g05230.t01	Wine grape	cytosol	10.59	6.98
KRH22239	Soybean	cytosol	6.46	5.32
Os02t0132600-02	Rice	cytosol	4.65	3.33
KRH25868	Soybean	cytosol, nucleus, plastid	0.78	1.08
KRH55647	Soybean	cytosol	1.29	1.08
PGSC0003DMT400049471	Potato	cytosol	1.03	0.93
GSMUA_Achr1P26200_001	Banana	extracellular	0.78	0.85
KRH25865	Soybean	cytosol	0.0	0.0
KRG88500	Soybean	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02004031	EnsemblPlants:KRH55650	EnsemblPlantsGene:GLYMA_06G269100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	ProteinID:KRH55650
ProteinID:KRH55650.1	SEG:seg	UniParc:UPI0006EDE4F1	UniProt:A0A0R0JS54	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr6:-:45792554..45797086

Molecular Weight (calculated)

44497.0 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.466

Length

387 amino acids

Sequence
(BLAST)

001: MRAPTARNLC TLSNLFRSKL LTRKRNTNVV PFTKPSPESE DEMYLSSEPY LARDTSQGDS FYENEDTNEL SDILCSKEDK RCALEEIDDD EEKRKQTVDI
101: PWILDLSHGK LSEKRKDVAR ERKQKWIFKY TSDDRFDRLI KMCADKLGVG KTVNVFGQLG RETGVKEYNT LIKMCVKKAR ATDDEFIGVR EMSKAFHLYK
201: SMRDLGYPLE EKTYGPLLRY LVDMGLVQEF QLFTDIIKTE NPSSASRLGY YEMLLWLRVG NEEMIRDICE YITVEAREET SALRESYLMA LCESDRKMQI
301: LDVVKNIDVT KLSSAKSIAD IFQSLGRLHL ESIADDLLLD LRACDHDADN ISNFIVSYAV SIPNLANYVS NLTLTFNVET SIAKDDS

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.