CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89389	Soybean	extracellular	31.71	52.0
KRH72458	Soybean	nucleus	63.41	44.83
CDY66640	Canola	cytosol	55.69	44.77
Bra026639.1-P	Field mustard	cytosol	55.69	43.77
CDY09423	Canola	cytosol	55.69	43.77
KRH16845	Soybean	nucleus	63.82	43.13
AT2G01710.2	Thale cress	mitochondrion	56.1	38.87
PGSC0003DMT400024179	Potato	cytosol	56.1	37.0
Solyc04g076270.1.1	Tomato	nucleus	54.88	36.29
KRG99455	Soybean	nucleus	34.15	32.31
KRH45560	Soybean	nucleus	32.11	29.81
KRH69663	Soybean	nucleus	29.27	24.24
KRH42098	Soybean	nucleus	43.09	23.3
KRH49811	Soybean	nucleus	43.5	22.72
KRH10601	Soybean	nucleus	42.68	21.13
KRH21766	Soybean	nucleus	42.68	21.04
KRH74501	Soybean	nucleus	28.05	14.23

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100802055	MapMan:12.5.1.16.2	EMBL:ACUP02002227	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
EnsemblPlantsGene:GLYMA_04G094000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
UniProt:I1JV61	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH62217	ProteinID:KRH62217
ProteinID:KRH62217.1	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR45496
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000233A0A2	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:8359193..8360588

Molecular Weight (calculated)

27045.4 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.142

Length

246 amino acids

Sequence
(BLAST)

001: MKTSRAEAER LLAIGEKLLQ SRDLSSSRDF AILAQEAEPL LEGSDQILAI VEVLLAAEKP ITNDHLDWYA ILQVDRTCQD LDLIKKQYRR LGLLLHPDKN
101: PFSLADHAFK LVSDAWAVLS DPVQKAIYDR DVAGSVEPES FWTACPYCYF LYEYPAVCEG CCLRCQNCER SFHGLSIPSL PPLVPGQEAY YCNWGCLPMG
201: FVFGNLGSDG PGPGPGPMVE NGPTAVAVSN GVNVASRKRG RPRKGV

Best Arabidopsis Sequence Match ( AT2G01710.2 )
(BLAST)

001: MLLFFFPRPF LHTANQSLVS SSLVEAIIFR SAHHFSAIAD GRRKMGDNNP NRSEAERLLG IAEKLLESRD LNGSKEFAIL AQETEPLLEG TDQILAVVDV
101: LLSSAPENRI KNQPNWYKIL QIEDLTESST DNDLIKKQYR RLALLLHPDK NRFPFADQAF RFVLDAWEVL STPTKKSQFD GDLNLIFTKV NLNTQKSKKK
201: TTTNEKMSTF WTACPYCYSL HEYPRVYQEY CIRCQNCQRA FHAASIPQLP PLIPGKDEYY CCWGFFPMGF VGGKGGEAAI ANGVDAAKFP NWMPPVFSSG
301: GVAAPPSGNG VSFDGWSGGA AKRDNEAVRS NNGVGVNSDG TPKKRGRGRP KKNPV

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.