CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10601
KRH21766
KRH42098
KRH49811

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	KRH10601	AT5G09540.1	21798944
AT1G73100.1	KRH21766	AT5G09540.1	21798944
AT1G73100.1	KRH42098	AT5G09540.1	21798944
AT1G73100.1	KRH49811	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56252	Soybean	nucleus	28.49	89.2
KRH20576	Soybean	nucleus	68.82	68.2
KRH13229	Soybean	nucleus	68.82	68.2
Bra009408.1-P	Field mustard	nucleus	44.83	58.4
VIT_13s0047g00120.t01	Wine grape	nucleus	60.72	56.56
Bra005829.1-P	Field mustard	nucleus	52.32	54.11
Bra028776.1-P	Field mustard	nucleus	51.42	54.02
AT5G04940.2	Thale cress	nucleus	53.52	53.28
Bra009409.1-P	Field mustard	nucleus	52.32	52.48
AT1G73100.1	Thale cress	nucleus	52.02	51.87
Bra016018.1-P	Field mustard	nucleus	49.92	49.19
KRH66648	Soybean	nucleus	48.28	45.48
Os12t0128450-00	Rice	nucleus	39.88	43.32
Os05t0490700-01	Rice	extracellular	43.03	42.71
TraesCS1B01G319000.1	Wheat	nucleus	43.03	42.58
TraesCS1B01G378900.1	Wheat	nucleus	43.03	42.58
TraesCS1D01G366800.1	Wheat	nucleus	43.03	42.46
TraesCS1A01G362000.1	Wheat	nucleus	42.73	42.16
TraesCS1D01G307700.1	Wheat	nucleus	42.43	41.99
GSMUA_Achr5P27620_001	Banana	nucleus	38.83	41.91
Zm00001d010646_P001	Maize	plastid	40.93	41.87
Os11t0131600-00	Rice	nucleus	41.68	41.87
TraesCS1A01G308300.1	Wheat	nucleus	42.13	41.69
KRG95012	Soybean	plastid	30.43	41.6
Zm00001d038541_P002	Maize	nucleus	42.88	41.33
EES19725	Sorghum	nucleus	41.68	41.25
TraesCS5D01G152000.1	Wheat	nucleus	41.23	39.97
TraesCS5A01G140500.1	Wheat	nucleus	40.78	39.88
TraesCS5B01G138800.1	Wheat	nucleus	41.38	38.87
TraesCS4B01G280000.1	Wheat	nucleus	42.13	38.76
Os01t0811300-01	Rice	nucleus, plasma membrane	42.73	38.72
Zm00001d041005_P001	Maize	nucleus	40.33	38.48
EES01635	Sorghum	nucleus	42.73	38.41
TraesCS3B01G366900.1	Wheat	nucleus	41.83	37.55
TraesCS3B01G367200.1	Wheat	nucleus	41.83	37.55
TraesCS3A01G336100.1	Wheat	nucleus	41.83	37.45
TraesCS3D01G329100.1	Wheat	nucleus	41.23	37.01
OQU78645	Sorghum	nucleus	41.38	37.0
Os11t0602200-01	Rice	nucleus	44.38	36.41
TraesCS3A01G385200.1	Wheat	plastid	39.13	35.95
Zm00001d043135_P003	Maize	nucleus	41.53	35.56
EES10399	Sorghum	nucleus	43.03	35.04
TraesCS4D01G278500.1	Wheat	nucleus	43.03	35.04
TraesCS4A01G023500.1	Wheat	nucleus	43.18	34.53
EER96081	Sorghum	nucleus	42.58	34.22
TraesCS3B01G417400.1	Wheat	nucleus	42.13	33.73
Zm00001d019195_P001	Maize	nucleus	43.03	33.53
KRG94709	Soybean	nucleus	14.09	31.23
TraesCS3D01G378200.1	Wheat	plastid	31.78	30.95
KRH07636	Soybean	nucleus	26.24	30.43
KRG90121	Soybean	nucleus	24.44	29.53
KRH49479	Soybean	nucleus	31.18	29.34
KRG89164	Soybean	nucleus	31.03	28.91
KRH76344	Soybean	nucleus	14.24	28.7
KRH20251	Soybean	nucleus, plastid	26.99	27.19
KRG91550	Soybean	nucleus	13.79	26.67
KRH06819	Soybean	nucleus	28.04	25.97
KRH35283	Soybean	nucleus	5.55	25.87
KRH39353	Soybean	nucleus	14.99	24.88
KRH77260	Soybean	nucleus	15.59	21.36
KRH28232	Soybean	nucleus	15.29	20.86
KRH77297	Soybean	nucleus	33.13	20.44
KRH28192	Soybean	nucleus	33.43	20.16
KRH34133	Soybean	nucleus	17.24	16.76
KRH68776	Soybean	nucleus	16.94	16.69
KRH67447	Soybean	nucleus	17.84	16.41
KRG92731	Soybean	nucleus	17.39	16.27
KRG95723	Soybean	nucleus	17.09	15.75
KRG97025	Soybean	nucleus	6.45	15.14
KRH32246	Soybean	nucleus	17.39	14.13
KRH19618	Soybean	nucleus	17.39	14.11
KRH76897	Soybean	nucleus	19.79	8.85
KRH28566	Soybean	nucleus	19.04	8.79
KRH08338	Soybean	nucleus	19.64	8.76
KRH69981	Soybean	nucleus	19.04	8.5
KRH67444	Soybean	cytosol	0.15	3.85
HORVU6Hr1G090170.1	Barley	cytosol	0.15	0.8

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100812173	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10
EMBL:ACUP02002340	EnsemblPlantsGene:GLYMA_04G125500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	UniProt:I1JVX0	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728
InterPro:IPR025794	InterPro:IPR036987	ProteinID:KRH62705.1	EnsemblPlants:KRH62706	ProteinID:KRH62706	ProteinID:KRH62706.1
PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868
PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF415	InterPro:PUA-like_sf	InterPro:Post-SET_dom
InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf
InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI0002339D9E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:16532221..16536664

Molecular Weight (calculated)

73490.6 Da

IEP (calculated)

8.872

GRAVY (calculated)

-0.464

Length

667 amino acids

Sequence
(BLAST)

001: MEEGLGQNSV PPHGPIDKSK ILDIKPLRSL IPIYSMSSQA PPAGQYPSGF SPFFPFGAPQ QTPTGVTTRG AATPAPLRAY KNPLGAGDSS STMNGFNGQD
101: TSGKKKRGSP SRHTKSSVNK PKKSQEPPAD LSGLVGISPA QREDGSREVV NIVLMAYDAL RRRLCQLEEA KELSSGSIKR ADLKACNTLM TRGIRTNMRK
201: RIGAVPGIEI GDIFYFRMEL CIVGLHAPSM GGIDALHIRG EFEEETLAVC IVSSGEYDDD AEDSDVIIYT GQGGNFFMNK DKHTTDQKLQ RGNLALDRSS
301: RQHNEVRVIR GMRDGVNPNN KIYVYDGLYK IQDSWIEKAK GGGGVFKYKL VRIPGQSSAF AVWKSIQKWK SGSPSRTGLI LADLSNGAEG IPVSLVNEVN
401: NVKAPTFFNY FHSLRHPKSF SLMQPSHGCT CIKACVPGDL NCSCIRRNEG DFPYTGNGIL VSRKPLVHEC GPTCQCFPNC KNRVSQTGLK HPMEVFRTKD
501: RGWGLRSLDP IRAGTFICEY AGEVVGRGKV SQLVKEGDEY VFDTTRIYDQ FKWNYEPRLL EEIGSNDSTE DYAMPYPLII TAKNIGNVAR FMNHSCSPNV
601: FWQPVVYEEN NQSYLHVAFF ALRHIPPMTE LTYDYGLAQS DHAEGSSAAK GRKKCLCGSS KCRGSFG

Best Arabidopsis Sequence Match ( AT5G04940.1 )
(BLAST)

001: MERNGGHYTD KTRVLDIKPL RTLRPVFPSG NQAPPFVCAP PFGPFPPGFS SFYPFSSSQA NQHTPDLNQA QYPPQHQQPQ NPPPVYQQQP PQHASEPSLV
101: TPLRSFRSPD VSNGNAELEG STVKRRIPKK RPISRPENMN FESGINVADR ENGNRELVLS VLMRFDALRR RFAQLEDAKE AVSGIIKRPD LKSGSTCMGR
201: GVRTNTKKRP GIVPGVEIGD VFFFRFEMCL VGLHSPSMAG IDYLVVKGET EEEPIATSIV SSGYYDNDEG NPDVLIYTGQ GGNADKDKQS SDQKLERGNL
301: ALEKSLRRDS AVRVIRGLKE ASHNAKIYIY DGLYEIKESW VEKGKSGHNT FKYKLVRAPG QPPAFASWTA IQKWKTGVPS RQGLILPDMT SGVESIPVSL
401: VNEVDTDNGP AYFTYSTTVK YSESFKLMQP SFGCDCANLC KPGNLDCHCI RKNGGDFPYT GNGILVSRKP MIYECSPSCP CSTCKNKVTQ MGVKVRLEVF
501: KTANRGWGLR SWDAIRAGSF ICIYVGEAKD KSKVQQTMAN DDYTFDTTNV YNPFKWNYEP GLADEDACEE MSEESEIPLP LIISAKNVGN VARFMNHSCS
601: PNVFWQPVSY ENNSQLFVHV AFFAISHIPP MTELTYDYGV SRPSGTQNGN PLYGKRKCFC GSAYCRGSFG

Arabidopsis Description

SUVH1Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.