CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10601
KRH21766
KRH42098
KRH49811

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	KRH10601	AT5G09540.1	21798944
AT1G73100.1	KRH21766	AT5G09540.1	21798944
AT1G73100.1	KRH42098	AT5G09540.1	21798944
AT1G73100.1	KRH49811	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95012	Soybean	plastid	64.55	93.65
VIT_08s0040g00360.t01	Wine grape	nucleus	63.28	60.79
Solyc09g082050.2.1	Tomato	nucleus	52.4	57.34
PGSC0003DMT400077329	Potato	nucleus	53.81	56.78
Solyc10g077070.1.1	Tomato	nucleus	56.21	55.74
PGSC0003DMT400018512	Potato	nucleus	56.07	55.29
Bra009408.1-P	Field mustard	nucleus	39.12	54.1
Bra005829.1-P	Field mustard	nucleus	46.33	50.85
KRH56252	Soybean	nucleus	15.11	50.23
AT5G04940.2	Thale cress	nucleus	46.89	49.55
AT1G73100.1	Thale cress	nucleus	46.61	49.33
KRH13229	Soybean	nucleus	46.19	48.59
Bra009409.1-P	Field mustard	nucleus	45.62	48.57
Bra028776.1-P	Field mustard	nucleus	43.36	48.35
KRH62706	Soybean	nucleus	45.48	48.28
Bra016018.1-P	Field mustard	nucleus	46.05	48.15
KRH20576	Soybean	nucleus	45.62	47.99
Os05t0490700-01	Rice	extracellular	43.22	45.54
GSMUA_Achr5P27620_001	Banana	nucleus	39.27	44.98
Zm00001d010646_P001	Maize	plastid	41.24	44.79
EES19725	Sorghum	nucleus	42.51	44.66
Os12t0128450-00	Rice	nucleus	38.28	44.14
TraesCS1B01G378900.1	Wheat	nucleus	41.67	43.77
Zm00001d038541_P002	Maize	nucleus	42.66	43.64
TraesCS1D01G366800.1	Wheat	nucleus	41.67	43.64
TraesCS1A01G362000.1	Wheat	nucleus	41.67	43.64
Os11t0131600-00	Rice	nucleus	40.82	43.52
TraesCS1D01G307700.1	Wheat	nucleus	41.24	43.32
TraesCS1A01G308300.1	Wheat	nucleus	41.1	43.18
TraesCS1B01G319000.1	Wheat	nucleus	40.96	43.03
EES01635	Sorghum	nucleus	42.66	40.7
Os01t0811300-01	Rice	nucleus, plasma membrane	41.95	40.35
TraesCS5A01G140500.1	Wheat	nucleus	38.14	39.59
TraesCS5D01G152000.1	Wheat	nucleus	38.42	39.53
Zm00001d041005_P001	Maize	nucleus	38.42	38.91
TraesCS4B01G280000.1	Wheat	nucleus	39.69	38.76
TraesCS3A01G336100.1	Wheat	nucleus	40.54	38.52
TraesCS5B01G138800.1	Wheat	nucleus	38.56	38.45
TraesCS3B01G367200.1	Wheat	nucleus	40.25	38.36
TraesCS3B01G366900.1	Wheat	nucleus	40.25	38.36
Zm00001d043135_P003	Maize	nucleus	41.81	38.0
TraesCS3D01G329100.1	Wheat	nucleus	39.83	37.95
OQU78645	Sorghum	nucleus	39.41	37.4
Os11t0602200-01	Rice	nucleus	42.09	36.65
EES10399	Sorghum	nucleus	42.09	36.39
EER96081	Sorghum	nucleus	42.37	36.14
TraesCS4D01G278500.1	Wheat	nucleus	41.81	36.14
TraesCS4A01G023500.1	Wheat	nucleus	41.95	35.61
Zm00001d019195_P001	Maize	nucleus	42.94	35.51
TraesCS3A01G385200.1	Wheat	plastid	35.73	34.85
TraesCS3B01G417400.1	Wheat	nucleus	40.11	34.09
TraesCS3D01G378200.1	Wheat	plastid	32.34	33.43
KRH49479	Soybean	nucleus	31.21	31.17
KRG90121	Soybean	nucleus	24.29	31.16
KRG89164	Soybean	nucleus	30.93	30.59
KRH07636	Soybean	nucleus	24.72	30.43
KRG94709	Soybean	nucleus	11.86	27.91
KRH20251	Soybean	nucleus, plastid	24.72	26.43
KRH76344	Soybean	nucleus	12.29	26.28
KRH06819	Soybean	nucleus	26.55	26.11
KRG91550	Soybean	nucleus	12.15	24.93
KRH39353	Soybean	nucleus	12.71	22.39
KRH35283	Soybean	nucleus	4.38	21.68
KRH77260	Soybean	nucleus	14.83	21.56
KRH28192	Soybean	nucleus	32.2	20.61
KRH77297	Soybean	nucleus	31.36	20.54
KRH28232	Soybean	nucleus	13.98	20.25
KRH68776	Soybean	nucleus	15.25	15.95
KRH67447	Soybean	nucleus	15.96	15.59
KRH34133	Soybean	nucleus	14.97	15.45
KRG97025	Soybean	nucleus	6.07	15.14
KRG95723	Soybean	nucleus	15.4	15.06
KRG92731	Soybean	nucleus	14.97	14.87
KRH32246	Soybean	nucleus	15.96	13.76
KRH19618	Soybean	nucleus	15.82	13.63
KRH28566	Soybean	nucleus	20.62	10.1
KRH76897	Soybean	nucleus	21.19	10.05
KRH08338	Soybean	nucleus	20.34	9.63
KRH69981	Soybean	nucleus	20.06	9.5
KRH67444	Soybean	cytosol	0.0	0.0
HORVU6Hr1G090170.1	Barley	cytosol	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100805932	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10
EMBL:ACUP02002000	EnsemblPlantsGene:GLYMA_03G119900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794
InterPro:IPR036987	UniProt:K7KEJ7	EnsemblPlants:KRH66648	ProteinID:KRH66648	ProteinID:KRH66648.1	PFAM:PF00856
PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom
InterPro:SET_dom	SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI0002339A80	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:33111118..33116403

Molecular Weight (calculated)

77350.8 Da

IEP (calculated)

8.409

GRAVY (calculated)

-0.433

Length

708 amino acids

Sequence
(BLAST)

001: MEHHFGQGTA EPASESFDKA RVLNVKPLRT LVPVFPSPSN PASSSTPQGG APFVCVSPSG PFPSGVAPFY PFFISPESQR LSEQNAQTPT SQRVAAGPIS
101: TAVPINSFRT PTGAANGDVG SSRKNARSRG QITDEDGHSN VEIEEIDADK GTGTGRLKRK SNKKTKARHI GGSVSVDVDP DAVAADILKS LNPMVFDVLN
201: QPEGSRDSVA YTLMTYEVMR RKLGQIEDSN KAANSGAKRP DLKAGALMMS KGIRTNSKKR IGGVPGVEIG DIFFFRFELC LVGLHAPSMA GIDYIGTKTS
301: QEEEPLAVSI VSSGGYEDNV DDGDVLIYSG QGGVNRDKGA SDQKLERGNL ALEKSAHRGN EVRVIRGLRD PQHPTGKIYV YDGLYKIQNS WVEKAKSGFN
401: VFKYKLVRLP EQPQAYMIWK SIQQWTEKSA SRAGVILPDL TSGAENVPVC LVNDVDNEKG PAYFTYIPTL KNLRPTAPVE SSTGCPCVGG CQSKNFNCPC
501: IQKNGGYLPY SSALLLADLK SVIYECGPSC QCPSNCRNRV SQSGLKFRLE VFRTKNKGWG LRSWDSIRAG TFICEYAGEV IDSARVEELG GDNEDDYIFD
601: STRIYQQLEV FPGDTEAPKI PSPLYISAKN EGNVSRFMNH SCSPNVLWRP VIRENKNESD LHIAFYAIRH IPPMMELTYD YGTVLPLKVG QRKKKCLCGS
701: VKCKGYFC

Best Arabidopsis Sequence Match ( AT1G17770.1 )
(BLAST)

001: MDKSIPIKAI PVACVRPDLV DDVTKNTSTI PTMVSPVLTN MPSATSPLLM VPPLRTIWPS NKEWYDGDAG PSSTGPIKRE ASDNTNDTAH NTFAPPPEMV
101: IPLITIRPSD DSSNYSCDAG AGPSTGPVKR GRGRPKGSKN STPTEPKKPK VYDPNSLKVT SRGNFDSEIT EAETETGNQE IVDSVMMRFD AVRRRLCQIN
201: HPEDILTTAS GNCTKMGVKT NTRRRIGAVP GIHVGDIFYY WGEMCLVGLH KSNYGGIDFF TAAESAVEGH AAMCVVTAGQ YDGETEGLDT LIYSGQGGTD
301: VYGNARDQEM KGGNLALEAS VSKGNDVRVV RGVIHPHENN QKIYIYDGMY LVSKFWTVTG KSGFKEFRFK LVRKPNQPPA YAIWKTVENL RNHDLIDSRQ
401: GFILEDLSFG AELLRVPLVN EVDEDDKTIP EDFDYIPSQC HSGMMTHEFH FDRQSLGCQN CRHQPCMHQN CTCVQRNGDL LPYHNNILVC RKPLIYECGG
501: SCPCPDHCPT RLVQTGLKLH LEVFKTRNCG WGLRSWDPIR AGTFICEFAG LRKTKEEVEE DDDYLFDTSK IYQRFRWNYE PELLLEDSWE QVSEFINLPT
601: QVLISAKEKG NVGRFMNHSC SPNVFWQPIE YENRGDVYLL IGLFAMKHIP PMTELTYDYG VSCVERSEED EVLLYKGKKT CLCGSVKCRG SFT

Arabidopsis Description

SUVH7Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.