CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
golgi 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62217	Soybean	cytosol, nucleus	44.83	63.41
KRH16845	Soybean	nucleus	64.37	61.54
Bra026639.1-P	Field mustard	cytosol	45.11	50.16
CDY66640	Canola	cytosol	43.97	50.0
CDY09423	Canola	cytosol	44.83	49.84
AT2G01710.2	Thale cress	mitochondrion	44.83	43.94
PGSC0003DMT400024179	Potato	cytosol	45.98	42.9
Solyc04g076270.1.1	Tomato	nucleus	44.83	41.94
KRG89389	Soybean	extracellular	17.53	40.67
KRG99455	Soybean	nucleus	24.43	32.69
KRH45560	Soybean	nucleus	22.7	29.81
KRH49811	Soybean	nucleus	36.49	26.96
KRH42098	Soybean	nucleus	34.77	26.59
KRH69663	Soybean	nucleus	20.98	24.58
KRH21766	Soybean	nucleus	32.76	22.85
KRH10601	Soybean	nucleus	31.61	22.13
KRH74501	Soybean	nucleus	20.11	14.43

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100816918	MapMan:12.5.1.16.2	EMBL:ACUP02001212	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
EnsemblPlantsGene:GLYMA_02G213900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
UniProt:I1JGZ9	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH72458	ProteinID:KRH72458
ProteinID:KRH72458.1	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR45496
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0002337426	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:40001858..40004507

Molecular Weight (calculated)

38165.2 Da

IEP (calculated)

8.379

GRAVY (calculated)

-0.457

Length

348 amino acids

Sequence
(BLAST)

001: MQSATRAEAE RLLGIAEKLL QNRDLVGSRE FAFLAQETEP LLEGSDQILA IVDVLLAADK RVNNHPDWYA VLQVDRRSDD LDLIKKQYRR LALLLHPDKS
101: RFHFADHAFQ LVADAWALLS DPIKKSVYDK ELSFFSRVDL SVPGWVQQQE KLPVRRTGPG PGPGPGPTAG RNSAASARED IHADENSRRR RSSTFWTACP
201: YCYRLYEYPR VYEGCCLRCQ NCDRSFHGVT VPSLPPLVPG QDAYYCCWGF FPMGFVVGSF GSPPQPEEEA APSAAEAPPS PPPPPQQPAS SLPNWMPVAA
301: ENGVGSVTPV AAATRLTRSG AAVPNGVGSG NGTGKKKRGR PRKYPLPS

Best Arabidopsis Sequence Match ( AT2G01710.1 )
(BLAST)

001: MGDNNPNRSE AERLLGIAEK LLESRDLNGS KEFAILAQET EPLLEGTDQI LAVVDVLLSS APENRIKNQP NWYKILQIED LTESSTDNDL IKKQYRRLAL
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.