CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69663	Soybean	nucleus	40.21	65.66
KRG99455	Soybean	nucleus	20.21	37.69
KRH45560	Soybean	nucleus	20.21	36.98
KRH62217	Soybean	cytosol, nucleus	14.23	28.05
Solyc11g010540.1.1	Tomato	cytosol	15.88	20.59
KRH72458	Soybean	nucleus	14.43	20.11
PGSC0003DMT400092251	Potato	cytosol	14.64	19.67
KRH42098	Soybean	nucleus	18.14	19.34
KRH49811	Soybean	nucleus	17.53	18.05
KRG89389	Soybean	extracellular	5.57	18.0
KRH16845	Soybean	nucleus	13.4	17.86
KRH10601	Soybean	nucleus	16.7	16.3
KRH21766	Soybean	nucleus	15.88	15.43
PGSC0003DMT400041631	Potato	cytosol, mitochondrion, nucleus, plastid	9.28	13.2

Protein Annotations

Gene3D:1.10.287.110	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0R0LCY9	EMBL:ACUP02000037	ncoils:Coil
InterPro:DnaJ_domain	EnsemblPlantsGene:GLYMA_01G023800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR001623	InterPro:IPR011598	InterPro:IPR036638	InterPro:IPR036869	InterPro:J_dom_sf
EnsemblPlants:KRH74501	ProteinID:KRH74501	ProteinID:KRH74501.1	PFAM:PF00010	PFAM:PF00226	PFscan:PS50076
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF196	SMART:SM00353	SUPFAM:SSF46565	SUPFAM:SSF47459
SUPFAM:SSF55021	UniParc:UPI0006ED96E8	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:2426625..2433075

Molecular Weight (calculated)

54357.0 Da

IEP (calculated)

9.353

GRAVY (calculated)

-0.568

Length

485 amino acids

Sequence
(BLAST)

001: MDPLRGSEPE NPIATCLSML SLRRFSACRD FARRLPPSDS VPRVLAVADV LSAADFYSVL QLRPSDGGNR DLARRQYAKL ALLLDPTNPD KLPFSDEALA
101: RVQNAWHVLS HPERRALHDR EQNANLNPNP MTASFWTACP YCWGLFEYEK RYEDRALLCH VCGKAFQGVP VKPPTKTGDA VMEGEELRQY YSCEASVPLM
201: CYEVMGNNVL GGQNAAQYVY ISDDNDNNDG GFVRNEGLQG SGEKRRMRVK TVANKEDGEL EFTEGDDDVF VGLVQGMQHV RNYYNSDAQM IRGGFHQTFI
301: SRTYKTSFLK PRSKVEIKLL AAKKHSEAEK RRRMRINGQY ETLRNILPNI IKKDKASVLA ETIKQVKELK KKVSKLEQDS SSNPSKDVVK FPNGTDKLNL
401: ERCNNDEGIV KATLSCEDRL GLMSSISGAL EQVKAKVVKA EIVSVGGRAR SVLWVQGLGN DGTGTLKSKL RVAMQKPPKM QRFTQ

Best Arabidopsis Sequence Match ( AT4G38070.1 )
(BLAST)

001: MVLLHHVSLS HYQNSSSLFS SSSESILCLF LVLCVMQLEQ GMRPISRCYN PTAYSTTMGR SFFAGAATSS KLFSRGFSVT KPKSKTESKE VAAKKHSDAE
101: RRRRLRINSQ FATLRTILPN LVKQDKASVL GETVRYFNEL KKMVQDIPTT PSLEDNLRLD HCNNNRDLAR VVFSCSDREG LMSEVAESMK AVKAKAVRAE
201: IMTVGGRTKC ALFVQGVNGN EGLVKLKKSL KLVVNGKSSS EAKNNNNGGS LLIQQQ

Arabidopsis Description

BHLH131Transcription factor bHLH131 [Source:UniProtKB/Swiss-Prot;Acc:P0CB25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.