CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28192	Soybean	nucleus	90.47	88.43
VIT_00s0309g00020.t01	Wine grape	nucleus	42.28	63.03
TraesCS3A01G520700.1	Wheat	nucleus	14.52	54.51
KRH77260	Soybean	nucleus	23.96	53.18
KRH28232	Soybean	nucleus	23.31	51.53
TraesCS3B01G590300.1	Wheat	nucleus	22.85	39.33
KRG90121	Soybean	nucleus	19.7	38.59
KRG94709	Soybean	nucleus	9.9	35.55
KRH20251	Soybean	nucleus, plastid	20.35	33.23
KRH76344	Soybean	nucleus	10.18	33.23
KRH62706	Soybean	nucleus	20.44	33.13
EES05802	Sorghum	nucleus	23.68	32.53
KRH56252	Soybean	nucleus	6.38	32.39
Os04t0544100-01	Rice	nucleus	25.16	32.34
KRH13229	Soybean	nucleus	19.89	31.95
KRH20576	Soybean	nucleus	19.8	31.8
EES12588	Sorghum	nucleus	26.18	31.76
KRH06819	Soybean	nucleus	20.91	31.39
KRH66648	Soybean	nucleus	20.54	31.36
TraesCS2B01G409600.1	Wheat	nucleus	26.55	29.83
TraesCS2D01G389100.1	Wheat	nucleus	26.27	29.58
KRH07636	Soybean	nucleus	15.54	29.22
KRH39353	Soybean	nucleus	10.73	28.86
KRG89164	Soybean	nucleus	18.59	28.07
KRH49479	Soybean	nucleus	18.32	27.93
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	25.99	27.88
KRG95012	Soybean	plastid	12.49	27.66
KRG91550	Soybean	nucleus	8.33	26.09
KRH35283	Soybean	nucleus	2.96	22.38
KRH68776	Soybean	nucleus	9.62	15.36
KRH67447	Soybean	nucleus	10.18	15.17
KRH34133	Soybean	nucleus	9.62	15.16
KRG95723	Soybean	nucleus	10.08	15.06
KRG92731	Soybean	nucleus	9.71	14.73
KRH19618	Soybean	nucleus	10.45	13.75
KRH32246	Soybean	nucleus	10.27	13.52
KRG97025	Soybean	nucleus	3.33	12.68
KRH08338	Soybean	nucleus	14.8	10.7
KRH28566	Soybean	nucleus	14.25	10.66
KRH76897	Soybean	nucleus	14.52	10.52
KRH69981	Soybean	nucleus	14.34	10.37
KRH67444	Soybean	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100803378	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	EMBL:ACUP02000669
EnsemblPlantsGene:GLYMA_01G204900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant
InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987
UniProt:K7K4X0	EnsemblPlants:KRH77297	ProteinID:KRH77297	ProteinID:KRH77297.1	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	UniParc:UPI00023BE8C6	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:53752567..53758476

Molecular Weight (calculated)

119733.0 Da

IEP (calculated)

6.420

GRAVY (calculated)

-0.594

Length

1081 amino acids

Sequence
(BLAST)

0001: MAAPVSNGHS EEGRNEKSLM ENGEYTFFAR SMYKRRKVSA VRDFPDGCGP FALRIDPVLN VNIVGCGSTN GTIIEDKNGE HLGDDTVKTS NCENDGSHSE
0101: VKDSLLTETL GQTTDSGLNM ENPVVSSPQV NGSTAEHEPA KVTIGQTIES GLNKENPVVS SHKMDGLTAE EEAAKVTVEQ TIDRVLNKEN PVVSSHQVDG
0201: PTAEDESVKV PLVDIEILNA EFARTANTVK CDSSYMLKSS SQVGEVVMSG GLKPLLPNVN ISGSSACMVE PVTRRYLPRR KVSALRDFPA LCGRNAPHLS
0301: KDKDVCLEGI SSLNNKKACQ QNLALDDNNP LKEVGAMAVD PLKEVGPADV KEIKSNIQDE YGYKRKLVDI VQTDSESNAA KRVKKPLEIK RDKHFTLPEE
0401: SNHHVKINSK AEVKEQNREE TKPLDLSHSK HKLKGNFNGS RVSSERKVVL GLMAESECPW RSDKGSSKFK FGDAKNEGKK KKVTVALPDR SKTAIKSKGA
0501: QNYSRQKPFK KKKGNATSEG MSELVICEKK DSLDSYENNE DLQIVLKSHE FNVNVTPSHS NFTGDEDDSN VTRKKVRKTL RLFQVVFRKL LQEVESKLSE
0601: RANSKRVDLI AAKILKENGH YVNSGKQILG DVPGVEVGDE FQYRVELNIV GLHRQIQGGI DYVKQNGKIL ATSIVASGAY ADDLDNSDGL IYTGQGGNVM
0701: NTDKEPEDQK LERGNLALKN SIEEKNSVRV IRGSESMDGK CRIYVYDGLY VVESCWQDVG PHGKLVYKFR LRRILGQPEL ALKEVKKSKK FKTREGVCVD
0801: DISYGKERIP ICAVNTIDDE NPPPFNYITS MIYPNCHVLP AEGCDCTNGC SDLEKCSCVV KNGGEIPFNH NEAIVQAKPL VYECGPTCKC PSTCHNRVSQ
0901: LGIKFQLEIF KTDTRGWGVR SLNSIPSGSF ICEYIGELLE DKEAEQRTGN DEYLFDIGNN YSNSTLWDDL STLTTLMPDA HSASCEVVKD GGFTIDAAQF
1001: GNLGRFINHS CSPNLIAQNV LYDHHDTRMP HIMFFAADNI PPLQELTYDY NYEIDQVRDS DGNIKKKYCY CGSVDCTGRM Y

Best Arabidopsis Sequence Match ( AT2G22740.2 )
(BLAST)

001: MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ
101: RDASENVSDI RMAEPVEVQP LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN LDQTQPLEIE MSDVAVAKPR
201: LVAGRKKAKK GIACHSSLKV VSREFGEGSR KKKSKKNLYW RDRESLDSPE QLRILGVGTS SGSSSGDSSR NKVKETLRLF HGVCRKILQE DEAKPEDQRR
301: KGKGLRIDFE ASTILKRNGK FLNSGVHILG EVPGVEVGDE FQYRMELNIL GIHKPSQAGI DYMKYGKAKV ATSIVASGGY DDHLDNSDVL TYTGQGGNVM
401: QVKKKGEELK EPEDQKLITG NLALATSIEK QTPVRVIRGK HKSTHDKSKG GNYVYDGLYL VEKYWQQVGS HGMNVFKFQL RRIPGQPELS WVEVKKSKSK
501: YREGLCKLDI SEGKEQSPIS AVNEIDDEKP PLFTYTVKLI YPDWCRPVPP KSCCCTTRCT EAEARVCACV EKNGGEIPYN FDGAIVGAKP TIYECGPLCK
601: CPSSCYLRVT QHGIKLPLEI FKTKSRGWGV RCLKSIPIGS FICEYVGELL EDSEAERRIG NDEYLFDIGN RYDNSLAQGM SELMLGTQAG RSMAEGDESS
701: GFTIDAASKG NVGRFINHSC SPNLYAQNVL YDHEDSRIPH VMFFAQDNIP PLQELCYDYN YALDQVRDSK GNIKQKPCFC GAAVCRRRLY

Arabidopsis Description

SUVH6Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.