CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27726	Soybean	nucleus	76.36	75.32
KRG92007	Soybean	nucleus	29.2	52.6
KRH34776	Soybean	nucleus	25.03	46.99
Bra033600.1-P	Field mustard	endoplasmic reticulum	9.41	28.21
TraesCS6D01G309500.4	Wheat	nucleus	7.7	27.07
HORVU6Hr1G080290.6	Barley	nucleus	7.49	26.52
PGSC0003DMT400045728	Potato	nucleus	20.11	26.33
TraesCS6B01G361300.1	Wheat	nucleus	7.49	26.32
Solyc02g081640.2.1	Tomato	nucleus	19.04	25.25
GSMUA_Achr2P23110_001	Banana	nucleus	3.74	24.48
CDY56766	Canola	nucleus	13.37	23.32
CDY12124	Canola	nucleus	14.55	23.09
Bra010701.1-P	Field mustard	nucleus	14.12	22.37
CDX90315	Canola	nucleus	13.9	21.96
CDY16866	Canola	vacuole	12.09	20.77
CDX72715	Canola	nucleus	11.44	20.62
VIT_03s0038g04460.t01	Wine grape	nucleus	23.1	20.51
CDX87111	Canola	nucleus	11.76	20.37
AT4G39160.2	Thale cress	nucleus	13.48	20.19
TraesCS1B01G326700.2	Wheat	nucleus	12.41	14.72
TraesCS6A01G330400.1	Wheat	nucleus, plastid	7.91	14.71
HORVU1Hr1G067100.2	Barley	nucleus	11.98	14.23
TraesCS1A01G314400.2	Wheat	nucleus	11.98	14.21
Zm00001d017507_P001	Maize	nucleus	8.02	14.12
TraesCS1D01G314900.1	Wheat	nucleus	11.87	14.09
KXG24287	Sorghum	nucleus	11.66	13.97
Zm00001d035113_P001	Maize	nucleus	11.98	13.37
OQU75762	Sorghum	nucleus	11.23	13.01
Zm00001d017505_P003	Maize	plastid	12.3	10.12
Os03t0840500-00	Rice	cytosol, nucleus	4.39	9.6

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100792788	MapMan:15.4.3.2	MapMan:15.5.2.2	EMBL:ACUP02000681	EnsemblPlantsGene:GLYMA_01G228200
GO:GO:0000126	GO:GO:0001026	GO:GO:0001156	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006359	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0070898	InterPro:Homeobox-like_sf	UniProt:K7K5C7	EnsemblPlants:KRH77688
ProteinID:KRH77688	ProteinID:KRH77688.1	PFAM:PF15963	PANTHER:PTHR22929	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	InterPro:TFIIIB_B''	UniParc:UPI0002336C95	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:55631460..55638544

Molecular Weight (calculated)

103030.0 Da

IEP (calculated)

4.632

GRAVY (calculated)

-0.861

Length

935 amino acids

Sequence
(BLAST)

001: MDPFDDILPV APTARTRPGA KFIPKAKSKQ LPRKEIPVSE HATSSKDGIL GNECQNAVAS AEESKGFIHH TQVEIPNSGD STNSKQASVK GDTAALVDDS
101: TITASEVDAN QNSINFLKPA CEVTEGDPVD FEGVNNGTTQ PVHHANAVEN ELNNVAAPSP TCSTIDRMKE QPKNGEDSFL DSNKCLELID NSILVGMDLG
201: FKSSSDDKIA IIQSNFDLKS NFCKKQEGVS AEFELDPFSN ILPNPVARNV HKFKPKIKPR PRAGNVPAIA SDSSNVRMEK SVELPTSCTN NFQSFLSCGD
301: GSGGVNQSTS LPLPTSEILR TTELPKKFDD SSSSIPFSED NKSLAAAIPS QLDSPNVMLS EDAVHNGTTD WSSSFRKSPG EAADIFSGLE SLHDFITQAA
401: TGTGKPALHS FNGKSGEENF VTPASSSINS FGECDITQAQ RCPEYHTPQD SLTFNEAAVL NEDNTHSSNR RSETEEIVDL NPACAGDDVI DYQFMKSGKD
501: PTGIPVHEEL TNAADSPTLA DFLHADVTRE KEDSNKRKND GSTSCSLRKK RRFIAGEEDK GAKTSRQLRK QAAHKPANSS FNEDVEDNND LDPPYNSNGD
601: ELQENDDDYE VNYPSRKKRV SKSSQKKSMA KSGKTSQKPK KAYEDLEKTE EPLKKFSHST RRKKRCVDKA LLEIPEDELD RLRIPIKDII LLEEHRERLA
701: KKEAMTSNIS STNQSGGDSL HEAGAYNEGA YNEGAYDDGA YNDGEFLGSE DGRDPYDDQA NEGIASTSVL LNYQSFREKT PRGKWSKQET ELFYEAVREM
801: GTDFSMIQEI FFPNKSRHQI KLKYKNEERQ QPLQLTDAVN NRAKDHPHSK LFIERLQLAS AKAEDPCRDA SDFVMAEEVV DLTAGTNEEV AEVATTKEDA
901: DVKEQEDSVA VPSPEQSDDS EDDFQRWSQY KSGYQ

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.