CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035113_P001	Maize	nucleus	73.33	68.26
Zm00001d017507_P001	Maize	nucleus	40.0	58.76
HORVU6Hr1G080290.6	Barley	nucleus	19.87	58.71
TraesCS6B01G361300.1	Wheat	nucleus	19.23	56.39
TraesCS6D01G309500.4	Wheat	nucleus	18.97	55.64
OQU75762	Sorghum	nucleus	55.77	53.9
Zm00001d017505_P003	Maize	plastid	71.41	49.03
TraesCS1B01G326700.2	Wheat	nucleus	46.15	45.69
HORVU1Hr1G067100.2	Barley	nucleus	45.51	45.11
TraesCS1D01G314900.1	Wheat	nucleus	45.51	45.05
TraesCS1A01G314400.2	Wheat	nucleus	45.13	44.67
Os03t0840500-00	Rice	cytosol, nucleus	19.1	34.89
TraesCS6A01G330400.1	Wheat	nucleus, plastid	18.08	28.03
GSMUA_Achr2P23110_001	Banana	nucleus	4.87	26.57
Bra033600.1-P	Field mustard	endoplasmic reticulum	10.26	25.64
CDY56766	Canola	nucleus	16.41	23.88
CDX72715	Canola	nucleus	14.74	22.16
CDX90315	Canola	nucleus	15.26	20.1
Bra010701.1-P	Field mustard	nucleus	15.0	19.83
AT4G39160.2	Thale cress	nucleus	15.77	19.71
CDY12124	Canola	nucleus	14.87	19.69
CDX87111	Canola	nucleus	12.69	18.33
KRG92007	Soybean	nucleus	11.54	17.34
CDY16866	Canola	vacuole	12.05	17.28
KRH34776	Soybean	nucleus	11.03	17.27
PGSC0003DMT400045728	Potato	nucleus	15.0	16.39
Solyc02g081640.2.1	Tomato	nucleus	14.23	15.74
VIT_03s0038g04460.t01	Wine grape	nucleus	18.59	13.77
KRH27726	Soybean	nucleus	15.13	12.45
KRH77688	Soybean	nucleus	13.97	11.66

Protein Annotations

Gene3D:1.20.58.1880	MapMan:15.4.3.2	MapMan:15.5.2.2	UniProt:A0A1B6PF40	GO:GO:0000126	GO:GO:0001026
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006359	GO:GO:0006383	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017884	ProteinID:KXG24285.1
ProteinID:KXG24286.1	EnsemblPlants:KXG24287	ProteinID:KXG24287	ProteinID:KXG24287.1	ProteinID:KXG24288.1	PFAM:PF15963
PFscan:PS51293	PANTHER:PTHR22929	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	EnsemblPlantsGene:SORBI_3007G020500
SUPFAM:SSF46689	InterPro:TFIIIB_B''	UniParc:UPI00081AC43B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:1925863..1933752

Molecular Weight (calculated)

86124.9 Da

IEP (calculated)

4.686

GRAVY (calculated)

-0.986

Length

780 amino acids

Sequence
(BLAST)

001: MIDDEANFDN MLDAAEEVQA TAKFRPKQRP KPQKTALSSR SAAPNPTEET GDGKVGALNQ VNSSKELTSQ ERTSLMCPGS ESVDTVAGSQ GTLGTPSGDA
101: LTVPLGPLAG ASAADKISQD GEHNDDPSKL AIHQESSVVS DINVSPNSSC GKAIDDIVEF GDMCDAQVEE ERVPKFQPKV QTKLLKETAK SRKTNQKLEA
201: STVDVVTQNG KGNNIETRFR DDQLQDPKSH ESVQIPDSEG LLATDNCKSC NLANLVLEES VQEETIAKFH PKLQPEPGKA SSKVAVTKNN VAAVAPMEET
301: ITGPAAWSPQ AVHATVDVDY HNELISPPTD GTQSMVGKVP GREKGKSKSV SFSLSDASGV ATPTDTNSEM GNIGKSCSDK LTDENLSNSS QQMTEKHSVT
401: EDQYSNDQDH EGEPLDHTVE QQPNSDVGEI ASSMKLRCRK KLQKVGTPNH TVDDCFDEDC VEPSLAEEDN DSGDDYTTGN KRKARKKSRD GVEESQQQKV
501: QKNKSKVSSR GRKRTLKDEL AAKPEKKKLT HRIRQRTPKE IKTLLESEEI DPMKLSAAHL RLLQEARERV NPKEIPSGPS SNSRSFGLED MDDLDYRDEE
601: ARFFDNDGTE NHVQNTTKLN YQSYMNKPAR GKWSKSDTDL FYEGIRQFGS DFAMIQQLFP DKTRHQVRQK FKSEEKKNPL LVHDAIFHRS GDNLYFKKVI
701: KQLNIEDVVL PEINNAQKQD GASSERGPGN ENVLDDFNEE ENSSNWSNEE HGGQMDDVQE EHDLGNGGDD DDLGDVFDWY

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.