CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021415_P001	Maize	nucleus	62.4	66.38
OQU89906	Sorghum	nucleus	54.22	59.05
Solyc02g082380.1.1	Tomato	nucleus	13.35	22.07
KXG21281	Sorghum	nucleus	10.35	21.97
Solyc02g082390.1.1	Tomato	nucleus	14.99	19.57
PGSC0003DMT400086891	Potato	nucleus	10.9	18.52
KXG21283	Sorghum	nucleus	11.17	16.8
OQU77390	Sorghum	nucleus	10.63	15.98
EER89387	Sorghum	nucleus	12.53	14.47
EER89299	Sorghum	nucleus	11.72	14.05
OQU76057	Sorghum	nucleus	11.72	14.01
EES18995	Sorghum	nucleus	10.08	13.41
EER89573	Sorghum	nucleus	11.44	13.29
EER94504	Sorghum	nucleus	10.08	12.85
EES18996	Sorghum	nucleus	10.08	12.85
EER88196	Sorghum	nucleus	10.9	12.66
PGSC0003DMT400091980	Potato	nucleus	13.9	12.66
OQU77389	Sorghum	nucleus	10.63	11.68
KXG21278	Sorghum	nucleus	10.35	11.05
EER88198	Sorghum	nucleus	9.54	11.01
KXG21280	Sorghum	nucleus	10.35	10.67
EES18997	Sorghum	nucleus	10.35	10.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A1B6QEK2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KXG36349	ProteinID:KXG36349	ProteinID:KXG36349.1	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR44042	PANTHER:PTHR44042:SF3	InterPro:SANT/Myb
SMART:SM00717	EnsemblPlantsGene:SORBI_3002G320300	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00081AB486	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:69179424..69182271

Molecular Weight (calculated)

42556.9 Da

IEP (calculated)

7.544

GRAVY (calculated)

-0.876

Length

367 amino acids

Sequence
(BLAST)

001: MDLKAIQEWT SCEVAEFKAL FAELRNEKSC DRMEVLEKRF PTKTIHQLRD KYVEVFADML YGEIDDESII DDTTSDLCDW YKLLEGDTHD SVLGPSVETS
101: LFQPSKQLVL KVAGDQEKIQ KPHYKSSRKE RQTWTAEEHR QFLYGVQHFG RGEWQSISKY FVPSRTPTQL ASHAQKHFDR IRNNELDDRR QRHTINDVRL
201: VNHDMNNTSH SHTEPEREKP NASSISLPIL TEDMDILHDL TQGMPNFGQA SNSPSNLAGQ TTHCNHTIES FFQWQGQGTS SPRKQWSVLL AQSRTEHWTW
301: PRRKRHLGGA TTKRRRKNNR RTLPHVLTAQ TPQEVLQFAQ ESDSGAKLSF EMVPIKGRDL HTVIPPF

Best Arabidopsis Sequence Match ( AT2G38090.1 )
(BLAST)

001: MNRGIEVMSP ATYLETSNWL FQENRGTKWT AEENKKFENA LAFYDKDTPD RWSRVAAMLP GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW
101: GGYDGASGNN GFNMNGYYFS AAGGKRGSAA RTAEHERKKG VPWTEEEHRQ FLMGLKKYGK GDWRNIARNF VTTRTPTQVA SHAQKYFIRQ VNGGKDKRRS
201: SIHDITTVNI PDSPDAAAAD NATANAPCSP PSVGGNQRET SEWEGQTLYD ETAAAFYNQN AFSETLLGMS STPYMAKLQE QSFLNASQFE SYNAYLQM

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.