CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015156_P001	Maize	plastid	74.16	75.78
Os02t0132600-02	Rice	cytosol	37.59	68.15
TraesCS6D01G087600.1	Wheat	cytosol, plastid	56.08	63.69
TraesCS6B01G124900.1	Wheat	cytosol, plastid	56.38	63.38
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	55.67	63.23
HORVU6Hr1G017720.35	Barley	plastid	54.75	60.36
GSMUA_Achr1P26200_001	Banana	extracellular	21.14	58.31
KRG88500	Soybean	cytosol	4.8	50.54
VIT_19s0014g05230.t01	Wine grape	cytosol	26.76	44.63
KRH25868	Soybean	cytosol, nucleus, plastid	12.56	44.24
KRH55647	Soybean	cytosol	20.74	43.75
PGSC0003DMT400049471	Potato	cytosol	19.0	43.16
KRH25865	Soybean	cytosol	6.44	42.86
KRH22239	Soybean	cytosol	18.59	38.72
Solyc07g064110.2.1	Tomato	plastid	30.85	35.53
Bra029518.1-P	Field mustard	plastid	27.58	35.53
Bra013567.1-P	Field mustard	cytosol, mitochondrion	27.99	35.17
GSMUA_Achr1P26220_001	Banana	plastid	15.22	34.98
CDX79101	Canola	cytosol, mitochondrion	29.42	34.82
CDY16646	Canola	plastid	29.01	34.68
AT4G04790.1	Thale cress	cytosol, mitochondrion	28.91	34.47
KRH27097	Soybean	cytosol, mitochondrion	26.56	34.44
CDX94576	Canola	plastid	29.01	34.42
CDX82873	Canola	cytosol, mitochondrion	29.42	33.61
AT4G21880.1	Thale cress	cytosol	27.68	32.15
KRH55650	Soybean	mitochondrion, plastid	11.54	29.2
KRG88502	Soybean	vacuole	11.24	29.18

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1Z5RL69	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU84311	ProteinID:OQU84311	ProteinID:OQU84311.1	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G031300
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B8B99D3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:2507592..2518175

Molecular Weight (calculated)

110525.0 Da

IEP (calculated)

8.237

GRAVY (calculated)

-0.285

Length

979 amino acids

Sequence
(BLAST)

001: MWKRLLETAK QAVSSKQAIP AAAVAPKPAT PAATTAAVAP KPENPAAITA AVAPKPVNPA AITAAVAPKP ENPAAPSASK HGTRVAAPKL STLKSPSYRR
101: RAAAGPETAV TQASLLRLKL AAASKKTNLP SSFPLARAHT LGNKQWGKYH LRPLPTSLSC TLASSFILTL LPSAQMRMTP LRLSPRRSSP DEEECATSPE
201: VPVEDSEDDG EVATSNKILD FEWFQTQPSR DPLMHWRREV AREKKKHYIF KNVESRRYTK LMRMCANRLG TESTIEFFGK LGRETGVKEF NSMIKLCLEK
301: AKACRDIDSA VEYIYRAYRL FETMKDKGLT IEKDIYGPFL LYLIDVGMFE EFEMFSAFFK ELNPKCFSRI AYYEMLLCIR IQDEEKIQEL CHSVEDYNEK
401: AHYDLAESYM LAFAESGRKE DLVALLDMLD LSKVSGSKYI YNIFKSLGRL ELENYAEKLL QGMRSKGCAD HNISSLILDY TTNITNIMVE DMLVAFHKWH
501: EKFEVAPSIA AYDKIISICC NSSKIGLALD VADRMCKSSS DVPVESFHPI IHACEQRCEL HMARPIYDLI RHHNLKLKSE TFRSMISLFV KLKDFEGAYN
601: ILTDAEEFGE ISTVSLYNAI MLGYYREKNY NGAQMVMSQM QIAGVKPDSE TFSYLIANCE SEENISKYRD QLRQDLIPMT RHIYVALTVA YARLGNFDMA
701: KQVLLDKEIP RKFLSDIKSA LVGALASNGQ VLDALRLHDV IKESGGSLEP KAAITLIEHI RTEGELDRMH QLLDGLNDSD SWFEGCGRVL LYCVQHNYTD
801: VAIDLLKQLK EKDEMSTYMV VDQVFCQIWD MEITNLDLGM VFLDAVKELG LNVSRTSLDF LLSACVKAKN LQRAQQIWSE YESAGLPHNV LTSLRMYQAF
901: LSSGGRKAAK KLLKTIPKED DHVRYIIDSC HTTYYSEDFK HSATVRLSSQ KRARSKQKAT NKGFRYADKK RLVRSCPQM

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.