CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021415_P001	Maize	nucleus	59.05	57.68
KXG36349	Sorghum	nucleus	59.05	54.22
PGSC0003DMT400086891	Potato	nucleus	10.39	16.2
KXG21281	Sorghum	nucleus	7.72	15.03
Solyc02g082380.1.1	Tomato	nucleus	9.2	13.96
Solyc02g082390.1.1	Tomato	nucleus	11.28	13.52
OQU77390	Sorghum	nucleus	8.61	11.89
KXG21283	Sorghum	nucleus	8.01	11.07
EER94504	Sorghum	nucleus	8.61	10.07
EER89387	Sorghum	nucleus	9.2	9.75
EER89299	Sorghum	nucleus	8.61	9.48
PGSC0003DMT400091980	Potato	nucleus	11.28	9.43
OQU76057	Sorghum	nucleus	8.01	8.79
EER89573	Sorghum	nucleus	8.01	8.54
EES18995	Sorghum	nucleus	6.82	8.33
EER88196	Sorghum	nucleus	7.72	8.23
EES18996	Sorghum	nucleus	6.53	7.64
EER88198	Sorghum	nucleus	7.12	7.55
OQU77389	Sorghum	nucleus	7.42	7.49
KXG21278	Sorghum	nucleus	7.42	7.27
KXG21280	Sorghum	nucleus	7.42	7.02
EES18997	Sorghum	nucleus	6.82	6.12

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A1W0W6C7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	EnsemblPlants:OQU89906	ProteinID:OQU89906	ProteinID:OQU89906.1	PFAM:PF00249
PANTHER:PTHR44042	PANTHER:PTHR44042:SF3	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3002G291850	SUPFAM:SSF46689
UniParc:UPI0009DC919A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:66994754..66997056

Molecular Weight (calculated)

39022.2 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.893

Length

337 amino acids

Sequence
(BLAST)

001: MDLKAIQEWT SCEAAEFKAL FAKLRNEKSC DRMEVLKKRF PAKTIHQLRD KYAEVFANML CGEIDNEPSR DDTRSDLRDW YKVLEGDTHD SVLRPSVETS
101: LFQPSKQLVL KAPRDQEEIQ KPHCKSSRKE RQTWTAEEHR QFLYGVQHFG QGEWKSISKY FVPSRTPTQH TINDVRLVNH DMNNTSHSHT EPGKGIPNAS
201: SITLPILTED MDILHDQKQG IPNFPNNFVG KTTHCNHTID SFFQRQGPGT ASPRKQWNVL LAQSRTEHWT WPRRKRRLAT ITKRRRKNNR RTLPNVLTAQ
301: NAQEVLQFAQ GSDNRAKLSC DIVPIKGRDL STTIPPF

Best Arabidopsis Sequence Match ( AT5G01200.1 )
(BLAST)

001: MSSSTMYRGV NMFSPANTNW IFQEVREATW TAEENKRFEK ALAYLDDKDN LESWSKIADL IPGKTVADVI KRYKELEDDV SDIEAGLIPI PGYGGDASSA
101: ANSDYFFGLE NSSYGYDYVV GGKRSSPAMT DCFRSPMPEK ERKKGVPWTE DEHLRFLMGL KKYGKGDWRN IAKSFVTTRT PTQVASHAQK YFLRQLTDGK
201: DKRRSSIHDI TTVNIPDADA SATATTADVA LSPTPANSFD VFLQPNPHYS FASASASSYY NAFPQWS

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.