Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G149700.1 | Wheat | nucleus | 84.75 | 84.91 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 83.43 | 83.9 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 83.62 | 83.62 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 83.99 | 80.94 |
| Zm00001d029426_P024 | Maize | nucleus | 84.18 | 75.89 |
| OQU92461 | Sorghum | nucleus | 88.32 | 72.83 |
| GSMUA_Achr6P10170_001 | Banana | nucleus | 71.75 | 70.82 |
| GSMUA_Achr10P... | Banana | nucleus | 63.47 | 67.54 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 68.93 | 66.3 |
| KRH77000 | Soybean | nucleus | 66.86 | 65.26 |
| AT4G36980.4 | Thale cress | nucleus | 67.42 | 64.39 |
| CDX75625 | Canola | nucleus | 65.54 | 63.62 |
| Bra011736.1-P | Field mustard | nucleus | 65.35 | 63.55 |
| KRH28473 | Soybean | nucleus | 65.16 | 63.14 |
| Solyc02g090850.2.1 | Tomato | nucleus | 66.48 | 62.92 |
| PGSC0003DMT400010353 | Potato | nucleus | 66.29 | 62.75 |
| CDX69275 | Canola | nucleus | 60.45 | 54.87 |
Protein Annotations
| EMBL:AK102573 | EnsemblPlants:Os03t0395900-02 | EnsemblPlantsGene:Os03g0395900 | EntrezGene:9268882 | InterPro:SWAP_N_domain | ncoils:Coil |
| PANTHER:PTHR13161 | PANTHER:PTHR13161:SF4 | PFAM:PF09750 | ProteinID:ABF96420.1 | ProteinID:BAS84562.1 | RefSeq:XP_015632210.1 |
| SEG:seg | SMART:SM01141 | UniParc:UPI0000DB429C | UniProt:Q10K55 | MapMan:35.2 | : |
Description
Hypothetical conserved gene. (Os03t0395900-01);Splicing factor, suppressor of white apricot domain containing protein. (Os03t0395900-02)
Coordinates
chr3:+:15986448..15992831
Molecular Weight (calculated)
61711.6 Da
IEP (calculated)
10.665
GRAVY (calculated)
-1.437
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARKSER KVHDLMDAAR RRAQRRAAYL ARRRGDPHQS LQVSGARCRV HRDDALYQAT EDQQGLIPWN GKQDVLIDRF DGRALLDFIR DSSSRPFRVQ
101: EKSEEEEELE EFVNFERYRD LIKHRRRGFS DEAGLQHVSQ ELEAKAILPF SFEKPQSSQT PASKGTYSQV GYSYKGDGNE ESEDLKSDEE DEEEEDEEDE
201: KGFSSDDSSD ERMESIAKEF GVKRYNWLVY MDKKAKEEEK RQKEIIKGDP SIKKLSRRER RKVSQIERER EREAARSVGR VSYRDPYREQ RRSPSYDSYS
301: RGRRSRSRSR SRSPSYSRRH GRGTHAESNY RSKPKTPRVE YITEFGGSDD TSDLKVAGIS PPSSPIRVGI PNRSSGGQIL EALHSDPASS LSVEQEKSTK
401: NLKAPTSTSA LVKLSKGATG GPGKTVRTEK KETPQERLKR IMSKQLNKQI RKDTAAEIAK KREQERQRQE KLAEVGRYRG RSRSLSRSPP RRRHYSRSRS
501: RSRSPRRYHS RSQSHSRSPS RSPRYRSRSR H
101: EKSEEEEELE EFVNFERYRD LIKHRRRGFS DEAGLQHVSQ ELEAKAILPF SFEKPQSSQT PASKGTYSQV GYSYKGDGNE ESEDLKSDEE DEEEEDEEDE
201: KGFSSDDSSD ERMESIAKEF GVKRYNWLVY MDKKAKEEEK RQKEIIKGDP SIKKLSRRER RKVSQIERER EREAARSVGR VSYRDPYREQ RRSPSYDSYS
301: RGRRSRSRSR SRSPSYSRRH GRGTHAESNY RSKPKTPRVE YITEFGGSDD TSDLKVAGIS PPSSPIRVGI PNRSSGGQIL EALHSDPASS LSVEQEKSTK
401: NLKAPTSTSA LVKLSKGATG GPGKTVRTEK KETPQERLKR IMSKQLNKQI RKDTAAEIAK KREQERQRQE KLAEVGRYRG RSRSLSRSPP RRRHYSRSRS
501: RSRSPRRYHS RSQSHSRSPS RSPRYRSRSR H
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.