Factsheet for Os07t0492100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97255	Sorghum	plastid	79.31	77.97
TraesCS2A01G226500.1	Wheat	plastid	79.4	77.47
TraesCS2D01G237200.2	Wheat	plastid	79.4	77.02
GSMUA_Achr4P26310_001	Banana	cytosol	5.75	75.28
HORVU2Hr1G051300.27	Barley	plastid	78.28	75.06
Zm00001d006443_P001	Maize	nucleus	78.45	74.73
Solyc03g093850.1.1	Tomato	cytosol	33.82	64.7
GSMUA_Achr4P26320_001	Banana	cytosol, mitochondrion, nucleus	47.9	61.18
CDX92677	Canola	nucleus, plastid	49.53	52.69
CDY11056	Canola	nucleus, plastid	49.44	52.65
AT4G25120.1	Thale cress	nucleus	50.64	51.44
VIT_16s0013g00300.t01	Wine grape	nucleus	47.47	51.16
Bra019188.1-P	Field mustard	nucleus	49.27	50.35
Solyc03g093840.1.1	Tomato	endoplasmic reticulum	9.61	47.26
KRH33265	Soybean	endoplasmic reticulum, plasma membrane, vacuole	7.12	37.73
TraesCS2B01G254500.1	Wheat	plastid	5.75	18.16

Protein Annotations

Gene3D:1.10.10.160	Gene3D:1.10.486.10	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4343276	ProteinID:BAC83302.1
ProteinID:BAD30552.1	ProteinID:BAF21597.1	ProteinID:BAT01562.1	InterPro:DExx_box_DNA_helicase_dom_sf	InterPro:DNA_helicase_UvrD-like_C	InterPro:DNA_helicase_UvrD/REP
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003678	GO:GO:0003824
GO:GO:0004003	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0036292	GO:GO:0043138
InterPro:IPR013986	InterPro:IPR014016	InterPro:IPR014017	EnsemblPlantsGene:Os07g0492100	EnsemblPlants:Os07t0492100-01	InterPro:P-loop_NTPase
PFAM:PF00580	PFAM:PF13361	PFscan:PS51198	PFscan:PS51217	PANTHER:PTHR11070	PANTHER:PTHR11070:SF2
UniProt:Q6ZHK2	SUPFAM:SSF52540	UniParc:UPI00001BF29D	InterPro:UvrD-like_ATP-bd	InterPro:UvrD/AddA_N	RefSeq:XP_015647249.1
SEG:seg	:	:	:	:	:

Description

DNA helicase, UvrD/REP type domain containing protein. (Os07t0492100-01)

Coordinates

chr7:-:18338217..18351636

Molecular Weight (calculated)

130676.0 Da

IEP (calculated)

6.131

GRAVY (calculated)

-0.573

Length

1165 amino acids

Sequence
(BLAST)

0001: MSRWKENASP LPLHPGGSSS LLPRKRPPPS PPPPQPPCPP PRRPLADVTG NALRQRGSGG GGCGYGYSTP APKAPRPSCR FLLDDDEGMD EAFLREVDAI
0101: CEEHERSSAR KDKEAGEAPP SIPSEPESGV SGDAFRKEEN AIGEEGDAQP LATSQEEMED ADEEEICELW FGDDSLPPAI SIATGGGEFE DAFWNISDIT
0201: EEVHHTGSSA KCQEDMDGKN SDGPSVPSVI CHEEREGELV DAFLEDLDAI HQGDATKGQE EPQETELEIE ENEGCVPKKY YEYLQSLNDR QREAACSDVT
0301: IPLMIVAGPG SGKTSTMVGR VLTLLKEEFP PSNILAMTFT TAAASEMRDR IGTVVGKAVA KEIVISTFHS FCLQLCRTHA EKLGRTSEFI IYGNGQQRRA
0401: VIEAERLLES DKNNGLGDAN KNCDGDIKNS FKDKAKKWQK FVTQAKASGR TPEEYEKKGD LTGASILRHY NEILRSCNAL DYHDFINSSI TLLTKFPEVY
0501: DECRNTWQAI VVDEFQDTSA MQYYLLKTLA SHNRITIVGD EDQSIFSFNG ADVSGFDSFR RDFPNHKEVR LSKNYRSTRA IVEAATALIH NNTKRQSHKL
0601: AETDNPSGNK IIVKECHSED SQCAFVIDKI IETTSSSVEG CHFGKIAVLY RRQITGKAFQ ASFRNRKIPF NIHGVAFYRK KVIKAIMAIL KTTLPGCDDD
0701: APWHQAFKAI LPGDKEEKKK IIHHIEKISL ARKCSFISAA TDIFSAKVSG TFKRAQITQG RKVLSALDSL SKLVEREQSV SVVISSAGDM LPQKYLLEKR
0801: AIVDADGGKL LNEDNDIRSV LQFLMDDVSD FLSTHFSSSV DTSKTEEKGC ASTLKAFIDY ISLRETENFR SRKEENKNSI TLTTIHQSKG LEWDVVFIVQ
0901: ANDSEIPLLH EYNGTVKEAG STLEEERRLF YVAMTRARKK LYILHVTVDS NRQLLQPSRF LREIPAHLLE VQGEGTVRRT PEQPVNIPFD QPEGDTSVER
1001: PMVVRNETSP FPEMDQPCLA NDFLKRFEIE DRAIISHIFH QWAKKQAFQN PKRLLDKIGF VIDERLRGKG YKRKDVLCKL KSFLSGDEAF GYAQYVIKWE
1101: QIPIDKRSHL MRERQEHFQK QRIENSMGSS EPTPKQISYL RNLGCTITPT SRLHASHLIE KYKSL

Best Arabidopsis Sequence Match ( AT4G25120.1 )
(BLAST)

0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL

Arabidopsis Description

SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.