Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0195500-01 | Rice | mitochondrion | 10.81 | 11.03 |
| Os09t0392100-01 | Rice | cytosol, nucleus, peroxisome, plastid | 11.36 | 9.98 |
Protein Annotations
| EMBL:AK120392 | EnsemblPlants:Os09t0392000-01 | EnsemblPlantsGene:Os09g0392000 | EntrezGene:4346961 | PANTHER:PTHR31354 | PANTHER:PTHR31354:SF4 |
| ProteinID:BAD26533.1 | ProteinID:BAF24999.1 | ProteinID:BAT07906.1 | ProteinID:EAZ44615.1 | RefSeq:XP_015612468.1 | SEG:seg |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00003B4733 | UniProt:Q6H416 | MapMan:35.2 | : |
Description
Similar to mRNA, clone: RTFL01-05-M08. (Os09t0392000-01)
Coordinates
chr9:+:13553673..13558013
Molecular Weight (calculated)
60962.1 Da
IEP (calculated)
5.077
GRAVY (calculated)
-0.099
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAARHRGGG THAAPLLLVV LLLLSMGRLP RAAAVGLGGG LGELMTKVPF SPGDVLPVLP RQVSWPVMNT LHSAVDLLPS FVAAVAPGAA PSDAAWSGAC
101: FARNEAALEL TPGDRNGTEL SGAVLRLKTA SAKSWTCMDL YVFATPYRIT WDYYFAAREH TLEIKSWEEE AELEYVKQHG ISVFLMPSGM LGTLLSLIDV
201: LPLFSNTGWG QHSNLAFLEK HMGASFEKRS QPWVTTIRKE DIHSGDFLAL SKIRGRWGAF ETLEKWVTGA FAGHTAVCLK DEKGEVWVAE SGFENEKGEE
301: IIVIVPWDEW WAMALKDSSN PQIALLPLHP DVRARFNESA AWDYARSMVG KPYGYHNMIF SWIDTIGDNY PPPLDANLVM AVMSMWTRLQ PLYAANMWNE
401: ALNKRLGTEG LDLHGIIVET ERRGMSFDQL LTIPEQDEWV YSDGKSTTCV AFILAMYKEA GIFTPFAESI QVTEFTIRDA YMLKIFEDNQ ARLPSWCNTE
501: SDKLPFCQIL GEYRMELPEY NTIEPYAKMN ENCPSLPPTY KRPARC
101: FARNEAALEL TPGDRNGTEL SGAVLRLKTA SAKSWTCMDL YVFATPYRIT WDYYFAAREH TLEIKSWEEE AELEYVKQHG ISVFLMPSGM LGTLLSLIDV
201: LPLFSNTGWG QHSNLAFLEK HMGASFEKRS QPWVTTIRKE DIHSGDFLAL SKIRGRWGAF ETLEKWVTGA FAGHTAVCLK DEKGEVWVAE SGFENEKGEE
301: IIVIVPWDEW WAMALKDSSN PQIALLPLHP DVRARFNESA AWDYARSMVG KPYGYHNMIF SWIDTIGDNY PPPLDANLVM AVMSMWTRLQ PLYAANMWNE
401: ALNKRLGTEG LDLHGIIVET ERRGMSFDQL LTIPEQDEWV YSDGKSTTCV AFILAMYKEA GIFTPFAESI QVTEFTIRDA YMLKIFEDNQ ARLPSWCNTE
501: SDKLPFCQIL GEYRMELPEY NTIEPYAKMN ENCPSLPPTY KRPARC
001: MSQNPSLFFL LCLGLGFCVD LGQSLKVPFS VNDVLPMLPR QVSWPVLNSF HNAVDLLPVF IGSVTPNNVS IEWKGACFNG NEARLDITGS DRDVPGLGGG
101: VLHLKTSKAH SLTCMDLYVF ATPYRITWDY YFSARDHTLN FDSWEEKAEL EYVKEHGVSV FLMPSGMLGT LLSLIDVLPL FSNTAWGQNA NLAFLTKHMG
201: ATFEKRSQPW RSMINPEDVH SGDFLAVSKI RGRWGGFETL EKWVTGAFAG HTAVCLKDDL GNLWVGESGH ENEKGEEIIV VIPWDEWWEL TLKDNSNPQV
301: ALLPLHPDIR AKFNNTAAWE YARSMLGKPY GYHNMIFSWI DTLGDNYPPP LDAHLVISVM SMWTRVQPAY AANMWNEALN KRLGTEDLDL YGILEETARR
401: GMSFDELLTI PEQDEWVYSD GKSTTCVAFI LAMYKAAGIF DPLADHIQVT EFTIRDAYTL KLFESNQTRL PSWCNTEEGK LDFCQILGEY RMELPGYNTI
501: YPYPNMNQNC PSLPPNYERP SKC
101: VLHLKTSKAH SLTCMDLYVF ATPYRITWDY YFSARDHTLN FDSWEEKAEL EYVKEHGVSV FLMPSGMLGT LLSLIDVLPL FSNTAWGQNA NLAFLTKHMG
201: ATFEKRSQPW RSMINPEDVH SGDFLAVSKI RGRWGGFETL EKWVTGAFAG HTAVCLKDDL GNLWVGESGH ENEKGEEIIV VIPWDEWWEL TLKDNSNPQV
301: ALLPLHPDIR AKFNNTAAWE YARSMLGKPY GYHNMIFSWI DTLGDNYPPP LDAHLVISVM SMWTRVQPAY AANMWNEALN KRLGTEDLDL YGILEETARR
401: GMSFDELLTI PEQDEWVYSD GKSTTCVAFI LAMYKAAGIF DPLADHIQVT EFTIRDAYTL KLFESNQTRL PSWCNTEEGK LDFCQILGEY RMELPGYNTI
501: YPYPNMNQNC PSLPPNYERP SKC
Arabidopsis Description
Uncharacterized protein At1g70160 [Source:UniProtKB/TrEMBL;Acc:Q9C5K0]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.