Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G141000.1 | Wheat | plastid | 48.21 | 46.31 |
| Zm00001d030537_P001 | Maize | cytosol, nucleus, plastid | 46.15 | 45.69 |
| TraesCS1D01G139900.1 | Wheat | plastid | 47.69 | 45.37 |
| HORVU1Hr1G037060.2 | Barley | cytosol, plasma membrane, plastid | 47.18 | 41.82 |
| Os07t0620200-01 | Rice | cytosol, mitochondrion, nucleus | 35.38 | 17.42 |
| Os03t0392400-01 | Rice | nucleus | 28.21 | 13.58 |
| Os09t0463700-01 | Rice | nucleus | 22.05 | 11.56 |
Protein Annotations
| EnsemblPlants:Os10t0378450-00 | EnsemblPlantsGene:Os10g0378450 | EntrezGene:107278330 | PANTHER:PTHR45496 | ProteinID:ABB47397.1 | ProteinID:BAT10614.1 |
| RefSeq:XP_015613918.1 | SEG:seg | UniParc:UPI00005E1DC1 | UniProt:Q338Y5 | MapMan:35.2 | : |
Description
Similar to AT hook-containing MAR binding 1-like protein. (Os10t0378450-00)
Coordinates
chr10:-:12119384..12120231
Molecular Weight (calculated)
20445.9 Da
IEP (calculated)
4.538
GRAVY (calculated)
-0.157
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MASATAAGDA SAAAFWTACP HCCYVHSYPR HYAGRRLRCP TAACRRAFSA AELPAAPPIV PGTDMYFCTW AFFPLGPPAA AADGWAPFTP FNSAPTPSPP
101: PATAAAPAPA PARAGGPTSR KKMCVSLKGR ARVEAEQEEE EEEAAAAATI IDLEPEVQEG GIGEKGFTGI NLNESVELSE LGFRDDEIEL FTAMS
101: PATAAAPAPA PARAGGPTSR KKMCVSLKGR ARVEAEQEEE EEEAAAAATI IDLEPEVQEG GIGEKGFTGI NLNESVELSE LGFRDDEIEL FTAMS
001: MGDNNPNRSE AERLLGIAEK LLESRDLNGS KEFAILAQET EPLLEGTDQI LAVVDVLLSS APENRIKNQP NWYKILQIED LTESSTDNDL IKKQYRRLAL
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V
Arabidopsis Description
Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.