Factsheet for PGSC0003DMT400003956

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090810.1.1	Tomato	nucleus	97.56	97.56
PGSC0003DMT400075191	Potato	nucleus	69.97	73.79
VIT_05s0049g02220.t01	Wine grape	nucleus	64.94	67.26
CDX73506	Canola	nucleus	53.59	58.93
CDX78210	Canola	nucleus	53.3	58.8
Bra007048.1-P	Field mustard	nucleus	53.16	58.64
KRH49479	Soybean	nucleus	58.91	57.83
KRG89164	Soybean	nucleus	59.05	57.4
AT4G13460.2	Thale cress	nucleus	53.59	57.38
AT2G33290.2	Thale cress	nucleus	53.02	56.68
CDY23755	Canola	nucleus	50.14	54.79
CDY37735	Canola	nucleus, plastid	49.43	54.0
Bra021840.1-P	Field mustard	nucleus, plastid	49.43	54.0
GSMUA_Achr5P13120_001	Banana	nucleus	46.55	53.38
KRH07636	Soybean	nucleus	43.82	53.04
GSMUA_Achr4P29270_001	Banana	nucleus	40.95	52.97
Os07t0435900-01	Rice	nucleus	50.14	51.02
TraesCS2A01G235400.1	Wheat	nucleus	48.71	50.6
GSMUA_Achr1P01130_001	Banana	nucleus	39.94	50.55
TraesCS2D01G240000.1	Wheat	nucleus	48.85	50.37
HORVU2Hr1G053260.1	Barley	nucleus	48.71	50.3
CDY19475	Canola	nucleus	39.66	50.0
TraesCS2B01G254700.1	Wheat	nucleus	47.99	49.63
CDY17156	Canola	nucleus	40.09	49.29
EER96294	Sorghum	nucleus	49.43	48.45
Zm00001d005445_P001	Maize	nucleus	37.93	46.23
GSMUA_Achr6P36730_001	Banana	nucleus	38.65	45.59
Bra005511.1-P	Field mustard	plastid	40.09	45.51
Zm00001d019520_P001	Maize	nucleus	37.64	39.88
PGSC0003DMT400054167	Potato	nucleus	22.41	32.37
PGSC0003DMT400092528	Potato	cytosol	9.91	32.24
PGSC0003DMT400077329	Potato	nucleus	29.6	30.7
PGSC0003DMT400080391	Potato	nucleus	19.68	30.51
PGSC0003DMT400018512	Potato	nucleus	29.6	28.69
PGSC0003DMT400080404	Potato	nucleus, plastid	25.0	28.48
PGSC0003DMT400046255	Potato	cytosol	10.63	22.56
PGSC0003DMT400054154	Potato	nucleus	25.29	20.75
PGSC0003DMT400080398	Potato	nucleus	25.14	19.89
PGSC0003DMT400054163	Potato	extracellular, nucleus	23.71	19.64
PGSC0003DMT400068351	Potato	nucleus	28.59	18.7
PGSC0003DMT400067504	Potato	nucleus	28.16	18.56
PGSC0003DMT400051920	Potato	nucleus	11.78	16.11
PGSC0003DMT400044180	Potato	nucleus	12.5	11.28

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:102578708	MapMan:12.3.3.7	MapMan:12.5.1.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024
GO:GO:0019538	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR007728
InterPro:IPR025794	InterPro:IPR036987	UniProt:M0ZMM5	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033
EnsemblPlantsGene:PGSC0003DMG400001557	PGSC:PGSC0003DMG400001557	EnsemblPlants:PGSC0003DMT400003956	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF95	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	UniParc:UPI0002961032	RefSeq:XP_006340877.1	SEG:seg	:	:

Description

SET domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001557]

Coordinates

chr9:+:57231945..57240684

Molecular Weight (calculated)

78288.8 Da

IEP (calculated)

5.777

GRAVY (calculated)

-0.382

Length

696 amino acids

Sequence
(BLAST)

001: MGSLVPFQDL NLQPESTNFT SSTTPNPRII PKIEPKLEPL DDYTQADLQT PAFFSNPSPN FNSSSGSAFT RNPQLTTPEA DSQSPSSIIP EIPPGCDGNN
101: VYVYSEYNRI SEMFKEAFTK KMQRYGDVEV VGNQNQDSAD EVMEDPDARA IVPVSNNDTQ VAEVVVARRK YQQRSAELVR VTDLKVEDQL YFRDAVRKTR
201: MLYDSLRILA MVEDDGSQHL GPYRKPRGDL KACQILREHG LWMNRDKRIV GAIPGVLIGD VFFFRMELLV VGLHGQAQAG IDYVPASQSS NREPIATSVI
301: VSGGYEDDQD GGDVIIYTGH GGQDKHSRQC VHQKLECGNL ALERSMHYGI EVRVIRGFKY EGSGSASGKV YVYDGLYRIV ECWFDVGKSG FGVYKYKLVR
401: IENQEEMGSA ILRFAQNLRI RPLVARPTGY VTLDISRKKE NVPVFLFNDI DDNHDPAYFE YLVKPIYPPH VSLNVHSGNG CECIDGCADN CFCAMRNGGQ
501: FAYDYNGILL RGKPLVFECG PHCRCPPTCR NRVTQKGLRN RFEVFRSRET GWGVRSLDLI QAGSFICEYT GVVLTRGQAQ IFTMNGDSLV YPSRFPDRWA
601: EWGDLSQIYP NYERPAYPSI PPLDFAMDVS RMRNVACYIS HSSSPNALVQ PVLYDHNHVA FPHMMLFAME NIPPLKEISI DYGVADEWTG KLAICD

Best Arabidopsis Sequence Match ( AT4G13460.1 )
(BLAST)

001: MGSSHIPLDP SLNPSPSLIP KLEPVTESTQ NLAFQLPNTN PQALISSAVS DFNEATDFSS DYNTVAESAR SAFAQRLQRH DDVAVLDSLT GAIVPVEENP
101: EPEPNPYSTS DSSPSVATQR PRPQPRSSEL VRITDVGPES ERQFREHVRK TRMIYDSLRM FLMMEEAKRN GVGGRRARAD GKAGKAGSMM RDCMLWMNRD
201: KRIVGSIPGV QVGDIFFFRF ELCVMGLHGH PQSGIDFLTG SLSSNGEPIA TSVIVSGGYE DDDDQGDVIM YTGQGGQDRL GRQAEHQRLE GGNLAMERSM
301: YYGIEVRVIR GLKYENEVSS RVYVYDGLFR IVDSWFDVGK SGFGVFKYRL ERIEGQAEMG SSVLKFARTL KTNPLSVRPR GYINFDISNG KENVPVYLFN
401: DIDSDQEPLY YEYLAQTSFP PGLFVQQSGN ASGCDCVNGC GSGCLCEAKN SGEIAYDYNG TLIRQKPLIH ECGSACQCPP SCRNRVTQKG LRNRLEVFRS
501: LETGWGVRSL DVLHAGAFIC EYAGVALTRE QANILTMNGD TLVYPARFSS ARWEDWGDLS QVLADFERPS YPDIPPVDFA MDVSKMRNVA CYISHSTDPN
601: VIVQFVLHDH NSLMFPRVML FAAENIPPMT ELSLDYGVVD DWNAKLAICN

Arabidopsis Description

SUVH9Histone-lysine N-methyltransferase family member SUVH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0G7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.