Factsheet for PGSC0003DMT400007468

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plasma membrane 6
extracellular 7
endoplasmic reticulum 6
golgi 5
vacuole 6
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009650.1.1	Tomato	nucleus	84.23	76.6
PGSC0003DMT400079355	Potato	extracellular	39.42	69.34
KRH03647	Soybean	endoplasmic reticulum, extracellular, plasma membrane	52.7	66.84
KRH20158	Soybean	endoplasmic reticulum	61.0	64.76
VIT_11s0016g05840.t01	Wine grape	endoplasmic reticulum, plasma membrane	60.58	54.89
Zm00001d002094_P001	Maize	extracellular, plastid	36.93	43.84
PGSC0003DMT400093516	Potato	plastid	40.25	42.36
Os04t0644400-01	Rice	nucleus	31.95	42.31
Zm00001d026436_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	33.61	39.71
EES12957	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	34.44	38.25
TraesCS2B01G546700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	39.0	33.57
TraesCS2D01G519700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	40.25	33.56
TraesCS2A01G518100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	39.83	32.88
PGSC0003DMT400035207	Potato	extracellular	48.55	30.0
HORVU2Hr1G114680.2	Barley	endoplasmic reticulum	38.17	21.96

Protein Annotations

Gene3D:1.10.110.10	EntrezGene:102587323	EntrezGene:102594756	MapMan:35.2	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store
InterPro:Hydrophob_seed	UniProt:M0ZT17	PFAM:PF14547	EnsemblPlantsGene:PGSC0003DMG400002880	PGSC:PGSC0003DMG400002880	EnsemblPlants:PGSC0003DMT400007468
PANTHER:PTHR31731	PANTHER:PTHR31731:SF54	SMART:SM00499	SUPFAM:SSF47699	SignalP:SignalP-noTM	UniParc:UPI000295BBB3
RefSeq:XP_006345219.1	RefSeq:XP_006358307.1	SEG:seg	:	:	:

Description

Proline-rich protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002880]

Coordinates

chr12:+:2714289..2715753

Molecular Weight (calculated)

24923.1 Da

IEP (calculated)

9.233

GRAVY (calculated)

0.529

Length

241 amino acids

Sequence
(BLAST)

001: MEFSKITSLL FISMLFLSSL TPILGCGYCG KPSHKPKKPK VPSPIVKPPI HLPPIGIPPV TVPPIVKPPV DLPPIGIPPV TVPPIVKPPV DLPPVGIPPV
101: TVPPVKPPVD LPPIGLPPIV KPPIGLPPIG IPPVIVPPVV KPSPKGKKPC PPTTKATCPI DTLKLGACVD LLGGLVHIGL GDPAVNECCP ILSGLVELEA
201: AACLCTTLKV KLLNLKIYVP LALQLLVTCG KSPPPGYTCS I

Best Arabidopsis Sequence Match ( AT2G10940.2 )
(BLAST)

001: MDSSKLSSLS LCLFLICIIY LPQHSLACGS CNPRKGGKHS PKAPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTIPKLPVPP VTVPKLPVPP
101: VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPLPP ISGLPIPPVV GPNLPLPPLP IVGPILPPGT TPPATGGKDC PPPPGSVKPP
201: SGGGKATCPI DTLKLGACVD LLGGLVKIGL GDPAVNKCCP LLKGLVEVEA AACLCTTLKL KALDLNLYVP VALQLLLTCG KNPPPGYTCS I

Arabidopsis Description

At2g10940/F15K19.1 [Source:UniProtKB/TrEMBL;Acc:Q9SKI0]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.