Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g090850.2.1 | Tomato | nucleus | 96.61 | 96.61 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 75.4 | 76.63 |
| KRH77000 | Soybean | nucleus | 69.88 | 72.06 |
| KRH28473 | Soybean | nucleus | 70.05 | 71.72 |
| GSMUA_Achr6P10170_001 | Banana | nucleus | 68.09 | 71.0 |
| AT4G36980.4 | Thale cress | nucleus | 69.7 | 70.32 |
| CDX75625 | Canola | nucleus | 67.74 | 69.47 |
| Bra011736.1-P | Field mustard | nucleus | 67.56 | 69.41 |
| GSMUA_Achr10P... | Banana | nucleus | 59.0 | 66.33 |
| Os03t0395900-02 | Rice | nucleus | 62.75 | 66.29 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 60.25 | 64.02 |
| TraesCS4D01G149700.1 | Wheat | nucleus | 60.25 | 63.77 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 59.89 | 63.28 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 60.43 | 61.52 |
| Zm00001d029426_P024 | Maize | nucleus | 62.75 | 59.76 |
| CDX69275 | Canola | nucleus | 59.54 | 57.09 |
| OQU92461 | Sorghum | nucleus | 64.17 | 55.9 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400010353 | EnsemblPlantsGene:PGSC0003DMG400004042 | EntrezGene:102593294 | InterPro:SWAP_N_domain | ncoils:Coil | PANTHER:PTHR13161 |
| PANTHER:PTHR13161:SF4 | PFAM:PF09750 | PGSC:PGSC0003DMG400004042 | RefSeq:XP_006339899.1 | SEG:seg | SMART:SM01141 |
| UniParc:UPI000294BFAF | UniProt:M0ZXW7 | MapMan:35.2 | : | : | : |
Description
Splicing factor, arginine/serine-rich [Source:PGSC_GENE;Acc:PGSC0003DMG400004042]
Coordinates
chr2:-:43860067..43867809
Molecular Weight (calculated)
65513.1 Da
IEP (calculated)
10.515
GRAVY (calculated)
-1.463
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPQQS IQAIGSRCRI YRDDALYQAT EDQQGMIPWN GKQDILIDRF DGRALLDFIR DASSRHRRVP
101: ERTEEEEELE EFVNFQRYRD LIKHRRRGFK DEEGMQHVNQ EMEAKTTALL GSDRPQLSQP PVCKGSYSQV GFSYDGEGKD EAHFSDGEEE DEDDDDDEEE
201: EDFNSDDSND EVMESIAKDY GVKRYGWLVY MDKKAKEEER RQREVIKGDP AIRKLSRKER RKASQLERER EREAARITGS RVLHHDPYRE SRRSPTYEAY
301: SRSRRSRSRS LSYSPPHSRR YERGGKSDDI YQGKERTPKI EYITEFGGAV DENKPKVEGY SPPPSPPPRT DPLSRPSTGR ILEALHVDPA SGVSIDKDKS
401: GQMLKTPTSA SSALSKLNKT TSSSSLSKQQ GEKKETPQER LKRIMSKQLN KQIKKDTAIE TAKKREQEKQ RLEKLAETSL VSRYRRRSRS RSYSRSPRRH
501: RRSRSPSRER SSRRYRSRSR SGSQSRTRSC SHSPSHSHSS SRSLSRSISR SRSPRRRRSR Y
101: ERTEEEEELE EFVNFQRYRD LIKHRRRGFK DEEGMQHVNQ EMEAKTTALL GSDRPQLSQP PVCKGSYSQV GFSYDGEGKD EAHFSDGEEE DEDDDDDEEE
201: EDFNSDDSND EVMESIAKDY GVKRYGWLVY MDKKAKEEER RQREVIKGDP AIRKLSRKER RKASQLERER EREAARITGS RVLHHDPYRE SRRSPTYEAY
301: SRSRRSRSRS LSYSPPHSRR YERGGKSDDI YQGKERTPKI EYITEFGGAV DENKPKVEGY SPPPSPPPRT DPLSRPSTGR ILEALHVDPA SGVSIDKDKS
401: GQMLKTPTSA SSALSKLNKT TSSSSLSKQQ GEKKETPQER LKRIMSKQLN KQIKKDTAIE TAKKREQEKQ RLEKLAETSL VSRYRRRSRS RSYSRSPRRH
501: RRSRSPSRER SSRRYRSRSR SGSQSRTRSC SHSPSHSHSS SRSLSRSISR SRSPRRRRSR Y
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLRHR
501: RSRSRSGSRS RRSRRHSSRS RSRSPSRSLS RSPKRSRRRS PSYSRSPRRR SSRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLRHR
501: RSRSRSGSRS RRSRRHSSRS RSRSPSRSLS RSPKRSRRRS PSYSRSPRRR SSRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.