Factsheet for PGSC0003DMT400018512

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400073845
PGSC0003DMT400079004
PGSC0003DMT400083794

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	PGSC0003DMT400073845	AT5G09540.1	21798944
AT1G73100.1	PGSC0003DMT400079004	AT5G09540.1	21798944
AT1G73100.1	PGSC0003DMT400083794	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g077070.1.1	Tomato	nucleus	97.49	98.04
PGSC0003DMT400077329	Potato	nucleus	69.92	74.81
VIT_08s0040g00360.t01	Wine grape	nucleus	60.45	58.89
KRH66648	Soybean	nucleus	55.29	56.07
KRG95012	Soybean	plastid	35.93	52.87
Bra009408.1-P	Field mustard	nucleus	37.05	51.95
Bra028776.1-P	Field mustard	nucleus	45.4	51.34
Bra005829.1-P	Field mustard	nucleus	45.96	51.16
Bra009409.1-P	Field mustard	nucleus	45.96	49.62
AT5G04940.2	Thale cress	nucleus	45.96	49.25
AT1G73100.1	Thale cress	nucleus	45.68	49.03
Bra016018.1-P	Field mustard	nucleus	45.54	48.3
GSMUA_Achr5P27620_001	Banana	nucleus	36.77	42.72
Os05t0490700-01	Rice	extracellular	39.83	42.56
Os12t0128450-00	Rice	nucleus	36.35	42.51
Os11t0131600-00	Rice	nucleus	39.28	42.47
TraesCS1B01G378900.1	Wheat	nucleus	39.83	42.43
Zm00001d010646_P001	Maize	plastid	38.44	42.33
TraesCS1D01G366800.1	Wheat	nucleus	39.83	42.31
EES19725	Sorghum	nucleus	39.69	42.28
TraesCS1A01G362000.1	Wheat	nucleus	39.41	41.86
TraesCS1B01G319000.1	Wheat	nucleus	38.58	41.1
TraesCS1D01G307700.1	Wheat	nucleus	38.44	40.95
Zm00001d038541_P002	Maize	nucleus	39.28	40.75
TraesCS1A01G308300.1	Wheat	nucleus	38.16	40.65
TraesCS5A01G140500.1	Wheat	nucleus	37.47	39.44
TraesCS4B01G280000.1	Wheat	nucleus	39.55	39.17
TraesCS5D01G152000.1	Wheat	nucleus	37.19	38.81
Zm00001d041005_P001	Maize	nucleus	37.6	38.63
TraesCS5B01G138800.1	Wheat	nucleus	37.6	38.03
EES01635	Sorghum	nucleus	39.28	38.01
Os01t0811300-01	Rice	nucleus, plasma membrane	38.86	37.91
TraesCS3B01G367200.1	Wheat	nucleus	39.0	37.69
TraesCS3B01G366900.1	Wheat	nucleus	39.0	37.69
TraesCS3A01G336100.1	Wheat	nucleus	38.86	37.45
TraesCS3D01G329100.1	Wheat	nucleus	38.3	37.01
OQU78645	Sorghum	nucleus	38.3	36.86
PGSC0003DMT400054167	Potato	nucleus	24.23	36.1
TraesCS4D01G278500.1	Wheat	nucleus	41.09	36.02
Zm00001d043135_P003	Maize	nucleus	38.86	35.82
EER96081	Sorghum	nucleus	41.36	35.78
Os11t0602200-01	Rice	nucleus	40.25	35.55
EES10399	Sorghum	nucleus	40.53	35.53
TraesCS4A01G023500.1	Wheat	nucleus	40.95	35.25
Zm00001d019195_P001	Maize	nucleus	41.5	34.81
TraesCS3A01G385200.1	Wheat	plastid	34.96	34.57
TraesCS3B01G417400.1	Wheat	nucleus	39.69	34.21
PGSC0003DMT400092528	Potato	cytosol	10.03	33.64
TraesCS3D01G378200.1	Wheat	plastid	31.48	32.99
PGSC0003DMT400075191	Potato	nucleus	28.97	31.52
PGSC0003DMT400080391	Potato	nucleus	19.22	30.73
PGSC0003DMT400003956	Potato	nucleus	28.69	29.6
PGSC0003DMT400080404	Potato	nucleus, plastid	24.79	29.13
PGSC0003DMT400046255	Potato	cytosol	11.0	24.09
PGSC0003DMT400054154	Potato	nucleus	26.74	22.64
PGSC0003DMT400054163	Potato	extracellular, nucleus	25.49	21.79
PGSC0003DMT400080398	Potato	nucleus	26.6	21.7
PGSC0003DMT400068351	Potato	nucleus	29.11	19.64
PGSC0003DMT400067504	Potato	nucleus	28.83	19.6
PGSC0003DMT400051920	Potato	nucleus	12.81	18.07
PGSC0003DMT400044180	Potato	nucleus	14.07	13.1
HORVU6Hr1G090170.1	Barley	cytosol	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:102601580	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214
InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	UniProt:M1AAS0
PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400007185	PGSC:PGSC0003DMG400007185	EnsemblPlants:PGSC0003DMT400018512
PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884
PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697
UniParc:UPI000295F70C	RefSeq:XP_006364759.1	RefSeq:XP_006364760.1	RefSeq:XP_015159572.1	SEG:seg	:

Description

Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007185]

Coordinates

chr10:+:59580382..59587151

Molecular Weight (calculated)

78746.5 Da

IEP (calculated)

7.916

GRAVY (calculated)

-0.491

Length

718 amino acids

Sequence
(BLAST)

001: MEQGFGTDSV PPAGPIDKSK VLDVKPLRCL VPVFPSPNGM ASGTTPQPSP FVCVPPSGPF PPGVSPFYPF LSPNESGRSA ENQDGLGFGT PISPVPLNSF
101: RTPTANGDTG PRRPGRPRAS NGLAAEDDDS QNHSDQFGSG YSVHANDVED TSTGKKRGRP RKTRLSQSGS GSGSGNPATP PIEVDIDPLL NQLLASFKLV
201: EIDQVKKADG DKELAGRILL VYDLFRRRMT QIEERRGETP GSARRPDLKG ANLLMTRGAR TNQTKRIGNV PGVEVGDIFF FRMELCLVGL HAPSMAGIDY
301: MSVRLTGDEE PIAVSIVSSG GYDDEGDDGD VLIYTGQGGV QRRDGQMFDQ KLERGNLALE KSMHRGNEVR VIRGVLDVQN GGRGKIYMYD GLYRVQESWA
401: EKSKLGNCSI FRYKLIRVPG QPEAFTLWKS VQQWREGTAT RVGVILPDLT SGAESQPVCL VNDVDDEKGP AYFTYIPSLK YSKPFMKSNP SVGCQCLGGC
501: QPGGTSCPCI QKNGGYLPFN PLGVLMSYKT LVHECGSACS CPPNCRNRIS QAGPKARVEV FKTKNRGWGL RSWDPIRGGG FVCEYAGEVI EESRVGEFGN
601: DGDDDYIFDA TRMYEPLEAV RDYNDESKKV PYPLVISAKK GGNVARFMNH SCSPNVFWQL VVREINNETF YHVAFFAIRH IPPMQELTFD YGMVPPDKAD
701: RRRKKCLCGS LNCRGYFY

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.