Factsheet for PGSC0003DMT400044180

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090630.1.1	Tomato	nucleus	92.22	89.55
VIT_05s0049g01800.t01	Wine grape	nucleus	38.13	52.5
PGSC0003DMT400051920	Potato	nucleus	30.61	46.37
TraesCSU01G137800.1	Wheat	nucleus	25.03	46.28
Zm00001d051126_P004	Maize	nucleus	29.44	44.77
GSMUA_Achr1P20340_001	Banana	nucleus	40.73	44.23
TraesCS2B01G503200.1	Wheat	nucleus	31.39	40.27
TraesCS2D01G478100.1	Wheat	nucleus	31.13	40.13
TraesCS2A01G478800.1	Wheat	nucleus	31.0	39.83
OQU85329	Sorghum	nucleus	33.46	38.05
TraesCS6A01G226600.1	Wheat	nucleus	33.07	37.44
TraesCS6D01G208400.1	Wheat	nucleus	32.81	37.15
TraesCS6B01G255000.1	Wheat	nucleus	32.68	37.0
Os02t0621100-01	Rice	nucleus	35.54	36.98
TraesCS2D01G378500.3	Wheat	nucleus	32.3	36.73
TraesCS2B01G399300.4	Wheat	nucleus	32.17	36.63
TraesCS2A01G382000.5	Wheat	nucleus	32.17	36.63
EES15150	Sorghum	nucleus	34.37	35.86
HORVU7Hr1G064110.6	Barley	nucleus, plastid	28.02	35.53
Zm00001d049884_P006	Maize	nucleus	33.85	35.13
Zm00001d031851_P002	Maize	nucleus	33.59	34.77
TraesCS2D01G477200.1	Wheat	mitochondrion, nucleus	33.2	34.69
HORVU2Hr1G107560.8	Barley	mitochondrion, nucleus	32.04	33.98
TraesCS2A01G478000.1	Wheat	mitochondrion, nucleus	32.68	33.83
TraesCS2B01G501300.2	Wheat	mitochondrion, nucleus	32.43	33.78
HORVU2Hr1G127700.1	Barley	nucleus	30.74	33.52
EES13161	Sorghum	nucleus	33.59	32.87
TraesCS2D01G566400.1	Wheat	nucleus	30.87	32.29
TraesCS2B01G616200.1	Wheat	nucleus	30.61	32.02
HORVU2Hr1G127770.1	Barley	nucleus	28.53	31.12
HORVU6Hr1G057990.5	Barley	nucleus	32.43	30.98
Zm00001d002938_P001	Maize	nucleus	26.46	28.69
PGSC0003DMT400046255	Potato	cytosol	10.77	25.3
PGSC0003DMT400054167	Potato	nucleus	12.06	19.29
PGSC0003DMT400077329	Potato	nucleus	14.4	16.54
PGSC0003DMT400080404	Potato	nucleus, plastid	12.32	15.55
PGSC0003DMT400018512	Potato	nucleus	13.1	14.07
PGSC0003DMT400075191	Potato	nucleus	11.8	13.79
PGSC0003DMT400080391	Potato	nucleus	7.52	12.92
PGSC0003DMT400003956	Potato	nucleus	11.28	12.5
PGSC0003DMT400054163	Potato	extracellular, nucleus	13.49	12.38
PGSC0003DMT400054154	Potato	nucleus	13.23	12.03
PGSC0003DMT400080398	Potato	nucleus	12.71	11.14
PGSC0003DMT400068351	Potato	nucleus	14.92	10.81
PGSC0003DMT400067504	Potato	nucleus	14.01	10.23
PGSC0003DMT400092528	Potato	cytosol	2.08	7.48

Protein Annotations

KEGG:00310+2.1.1.43	Gene3D:1.10.8.850	MapMan:12.3.3.7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:IPR001214	InterPro:IPR007728
InterPro:IPR025776	UniProt:M1BFR2	PFAM:PF00856	PFAM:PF05033	PFAM:PF10440	EnsemblPlantsGene:PGSC0003DMG400017150
PGSC:PGSC0003DMG400017150	EnsemblPlants:PGSC0003DMT400044180	PFscan:PS50280	PFscan:PS50867	PFscan:PS51580	PANTHER:PTHR22884
PANTHER:PTHR22884:SF460	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00468	SUPFAM:SSF82199
InterPro:SUVR4/1/2	UniParc:UPI0002950118	InterPro:WIYLD_domain	SEG:seg	:	:

Description

Set domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017150]

Coordinates

chr9:-:56929847..56934539

Molecular Weight (calculated)

85844.3 Da

IEP (calculated)

5.832

GRAVY (calculated)

-0.445

Length

771 amino acids

Sequence
(BLAST)

001: MAPNPKSRVT KAFEAMKVFG YSETVVKPVL RNLLNLYNKN WKLIEDENYS VLLESTIDSE ESKEKQKSSL EDEPEENEPP LKRSRLYSQG NHSSPAKHNA
101: GPSADACTSE LQPSSKQKMA EITTESYETQ DAELKRLSLL NHYQRKGKKQ ISSEASPVSE EDNEIVLLSD DDMRGPCTLS SHLELKKRGD TSRSYPAVIP
201: KRRLAYNSSL EEPNVMGSTD VSNEGALVQY GFSDAIPLSD NLPGFDVPLA IFPSEGTEED ATNSSRLIIA SSPNGEVKVS FVYKTYSSSD FCPPSLDAVF
301: KRMEEKYMKS YRFSQPGFLL SLMENLCKCY LTVGTKAKAV NEPSAGIGSQ KLHPVGVRYD ATNHELHFAP DTSNGSFKLS NFIKILPQIP TFPASGNRDI
401: MCYMVDFNGT RINGAEKDNT NKLLKLLASS TMNNSVLVQS EHSSPGLRNS VYYIEDIANG QEEHKISLIN EFSHVLPVFK YIPKSVIFQN AYVKFLLARI
501: SDDSCCSNCS GDCLSQDIPC ACAGETGGEF AYTSGGLLKE KFLESCISMS CEPQKHGLVY CQDCPLERSK NNSVSGLCKG HLVRKFIKEC WHKCGCSRGC
601: GNRVIQRGIA VPLQVFMTAD GKGWGLRALE DLPRGAFVCE YVGEIVTNTE LYERNTQTAG ERHTYPVLLD ADWGSEGVLK DEEALCLDAT YYGNIARFIN
701: HRCYEGNLIE IPVEVETPDH HYYHVAFFTM RKVNALEELT WDYGIDFTDH SHPVKAFKCC CGSKSCRDTG L

Best Arabidopsis Sequence Match ( AT3G04380.1 )
(BLAST)

001: MISLSGLTSS VESDLDMQQA MLTNKDEKVL KALERTRQLD IPDEKTMPVL MKLLEEAGGN WSYIKLDNYT ALVDAIYSVE DENKQSEGSS NGNRGKNLKV
101: IDSPATLKKT YETRSASSGS SIQVVQKQPQ LSNGDRKRKY KSRIADITKG SESVKIPLVD DVGSEAVPKF TYIPHNIVYQ SAYLHVSLAR ISDEDCCANC
201: KGNCLSADFP CTCARETSGE YAYTKEGLLK EKFLDTCLKM KKEPDSFPKV YCKDCPLERD HDKGTYGKCD GHLIRKFIKE CWRKCGCDMQ CGNRVVQRGI
301: RCQLQVYFTQ EGKGWGLRTL QDLPKGTFIC EYIGEILTNT ELYDRNVRSS SERHTYPVTL DADWGSEKDL KDEEALCLDA TICGNVARFI NHRCEDANMI
401: DIPIEIETPD RHYYHIAFFT LRDVKAMDEL TWDYMIDFND KSHPVKAFRC CCGSESCRDR KIKGSQGKSI ERRKIVSAKK QQGSKEVSKK RK

Arabidopsis Description

SUVR4Histone-lysine N-methyltransferase SUVR4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W595]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.