Factsheet for PGSC0003DMT400045728

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081640.2.1	Tomato	nucleus	79.97	80.99
Bra033600.1-P	Field mustard	endoplasmic reticulum	14.85	33.97
TraesCS6B01G361300.1	Wheat	nucleus	10.5	28.2
HORVU6Hr1G080290.6	Barley	nucleus	10.22	27.65
CDY56766	Canola	nucleus	20.73	27.61
TraesCS6D01G309500.4	Wheat	nucleus	10.08	27.07
CDY12124	Canola	nucleus	22.27	26.99
GSMUA_Achr2P23110_001	Banana	nucleus	5.32	26.57
CDX90315	Canola	nucleus	21.71	26.18
Bra010701.1-P	Field mustard	nucleus	21.57	26.1
KRG92007	Soybean	nucleus	18.77	25.82
KRH34776	Soybean	nucleus	17.93	25.7
CDX72715	Canola	nucleus	18.49	25.43
CDY16866	Canola	vacuole	18.77	24.63
AT4G39160.2	Thale cress	nucleus	21.15	24.2
CDX87111	Canola	nucleus	17.79	23.52
VIT_03s0038g04460.t01	Wine grape	nucleus	30.25	20.51
KRH77688	Soybean	nucleus	26.33	20.11
KRH27726	Soybean	nucleus	25.63	19.3
Zm00001d017507_P001	Maize	nucleus	12.75	17.14
OQU75762	Sorghum	nucleus	17.65	15.61
KXG24287	Sorghum	nucleus	16.39	15.0
TraesCS1B01G326700.2	Wheat	nucleus	16.11	14.59
TraesCS1D01G314900.1	Wheat	nucleus	16.11	14.59
HORVU1Hr1G067100.2	Barley	nucleus	15.83	14.36
TraesCS1A01G314400.2	Wheat	nucleus	15.83	14.34
TraesCS6A01G330400.1	Wheat	nucleus, plastid	10.08	14.31
Zm00001d035113_P001	Maize	nucleus	15.41	13.13
Zm00001d017505_P003	Maize	plastid	15.83	9.95
Os03t0840500-00	Rice	cytosol, nucleus	4.48	7.49

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102601114	MapMan:15.4.3.2	MapMan:15.5.2.2	GO:GO:0000126	GO:GO:0001026
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006359	GO:GO:0006383	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017884	UniProt:M1BI38
PFAM:PF15963	EnsemblPlantsGene:PGSC0003DMG402017733	PGSC:PGSC0003DMG402017733	EnsemblPlants:PGSC0003DMT400045728	PFscan:PS51293	PANTHER:PTHR22929
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	InterPro:TFIIIB_B''	UniParc:UPI0002960625
RefSeq:XP_006363192.1	SEG:seg	:	:	:	:

Description

Myb-transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG402017733]

Coordinates

chr2:+:37419869..37429828

Molecular Weight (calculated)

79328.1 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.845

Length

714 amino acids

Sequence
(BLAST)

001: MDLLDDIFAG GASKTVKAGG KFQPKAKPRS LKKGPAVASS SLTSKPTGDT VATDSSEALK SGKNSQNCDE QSSVLAEPSL VHPLAAETLV PSVGSSLDAS
101: MVITDNNENW KSCFEKSEGE NADIYIGLDS FDDLLPHSSG IDPSAAHAAG AEKQQEQLLI PVSSVDGSAH SASNLQSDEV AAGQDPLTFQ ASVLSVSGSC
201: QMEMDTYSSL EADILGVTTI SGQSRRFQPK PKLQVYRERY DTIIPDLDVG ESVSCLPDSH SVHSEMDFVD NGKEHGLPAA DVLDFSVRGF DNNIITESAH
301: EFPVHEEYVA EASLPDADIP AKHSEATSQM PEEPVPQRPK TKKQKFSASE LSAISEENGE SRSLRSRRKS VNASRLVDEF DEDVIGDGEY VPEHPNDSVT
401: IGNDEEFLVE NDSQGKKVQK KSKKTVTKEG KRVRKSKKTA EASDQAANKK PKKFSHSTRQ KRRTVDKTLL EAPMDEIDYS KVPIKDLILL AEHKERLAKK
501: DAAVSQIPTT TDQSARASVS NYDEDETYAS DEDGEADDHS KSTMAEDTSA YFNYQTYMDK TPSTRWSKQD TELFYEAVQQ FGTDLSLIQQ LFPGRTRRQL
601: KLKYKKEERQ NPFRLHDALT NRSKDHSHFE RVIERLKQIE AEELQYADKD ESIDLTGEEE MGTQEIYEEE AKSEHVEEKE VETVEQDVPE MENPVKEYDD
701: EDDFMKWSQY TSEV

Best Arabidopsis Sequence Match ( AT4G39160.2 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: IICKRHAKLA MNTFVIFTNS KTRP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.